Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2859

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2856 and DVU2857 are separated by 199 nucleotidesDVU2857 and DVU2858 overlap by 1 nucleotidesDVU2858 and DVU2859 are separated by 49 nucleotidesDVU2859 and DVU2860 are separated by 3 nucleotidesDVU2860 and DVU2861 overlap by 17 nucleotidesDVU2861 and DVU2862 overlap by 4 nucleotides DVU2856: DVU2856 - conserved domain protein (TIGR), at 2,956,426 to 2,957,916 DVU2856 DVU2857: DVU2857 - conserved hypothetical protein (TIGR), at 2,958,116 to 2,958,376 DVU2857 DVU2858: DVU2858 - tail tube protein, putative (TIGR), at 2,958,376 to 2,958,741 DVU2858 DVU2859: DVU2859 - tail sheath protein, putative (TIGR), at 2,958,791 to 2,960,254 DVU2859 DVU2860: DVU2860 - conserved hypothetical protein (TIGR), at 2,960,258 to 2,960,449 DVU2860 DVU2861: DVU2861 - hypothetical protein (TIGR), at 2,960,433 to 2,960,990 DVU2861 DVU2862: DVU2862 - hypothetical protein (TIGR), at 2,960,987 to 2,961,313 DVU2862 Position (kb) 2958 2959 2960 2961Strain fitness (log2 ratio) -2 -1 0 1at 2958.121 kb on + strandat 2959.157 kb on + strand, within DVU2859at 2959.189 kb on - strand, within DVU2859at 2959.453 kb on + strand, within DVU2859at 2959.930 kb on + strand, within DVU2859at 2959.933 kb on - strand, within DVU2859at 2959.988 kb on + strand, within DVU2859at 2960.030 kb on - strand, within DVU2859at 2960.703 kb on + strand, within DVU2861at 2960.925 kb on - strand, within DVU2861at 2960.925 kb on - strand, within DVU2861

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,958,121 + -1.7
2,959,157 + DVU2859 0.25 +0.0
2,959,189 - DVU2859 0.27 -0.0
2,959,453 + DVU2859 0.45 +0.3
2,959,930 + DVU2859 0.78 +0.7
2,959,933 - DVU2859 0.78 -1.5
2,959,988 + DVU2859 0.82 -0.3
2,960,030 - DVU2859 0.85 +0.1
2,960,703 + DVU2861 0.48 +0.1
2,960,925 - DVU2861 0.88 +0.4
2,960,925 - DVU2861 0.88 -2.2

Or see this region's nucleotide sequence