Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2835

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2832 and DVU2833 are separated by 157 nucleotidesDVU2833 and DVU2835 are separated by 397 nucleotidesDVU2835 and DVU2836 are separated by 96 nucleotidesDVU2836 and DVU2837 are separated by 112 nucleotides DVU2832: DVU2832 - transcriptional regulator cII, putative (TIGR), at 2,938,894 to 2,939,355 DVU2832 DVU2833: DVU2833 - hypothetical protein (TIGR), at 2,939,513 to 2,939,842 DVU2833 DVU2835: DVU2835 - transcriptional regulator, putative (TIGR), at 2,940,240 to 2,940,512 DVU2835 DVU2836: DVU2836 - hypothetical protein (TIGR), at 2,940,609 to 2,941,055 DVU2836 DVU2837: DVU2837 - conserved hypothetical protein (TIGR), at 2,941,168 to 2,942,241 DVU2837 Position (kb) 2940 2941Strain fitness (log2 ratio) -2 -1 0 1 2at 2939.249 kb on + strand, within DVU2832at 2939.257 kb on - strand, within DVU2832at 2939.520 kb on + strandat 2939.600 kb on + strand, within DVU2833at 2939.636 kb on - strand, within DVU2833at 2939.714 kb on - strand, within DVU2833at 2939.797 kb on + strand, within DVU2833at 2939.808 kb on + strand, within DVU2833at 2939.808 kb on + strand, within DVU2833at 2939.823 kb on + strandat 2939.856 kb on + strandat 2939.899 kb on + strandat 2939.909 kb on - strandat 2939.909 kb on - strandat 2939.914 kb on - strandat 2939.914 kb on - strandat 2939.914 kb on - strandat 2939.942 kb on - strandat 2939.944 kb on - strandat 2939.990 kb on - strandat 2939.999 kb on + strandat 2940.007 kb on - strandat 2940.049 kb on + strandat 2940.151 kb on + strandat 2940.155 kb on - strandat 2940.168 kb on + strandat 2940.168 kb on + strandat 2940.185 kb on - strandat 2940.190 kb on + strandat 2940.192 kb on - strandat 2940.208 kb on - strandat 2940.288 kb on - strand, within DVU2835at 2940.288 kb on - strand, within DVU2835at 2940.320 kb on + strand, within DVU2835at 2940.338 kb on - strand, within DVU2835at 2940.403 kb on - strand, within DVU2835at 2941.059 kb on - strandat 2941.072 kb on + strandat 2941.090 kb on + strandat 2941.185 kb on + strandat 2941.193 kb on - strandat 2941.194 kb on - strandat 2941.235 kb on - strandat 2941.269 kb on - strandat 2941.303 kb on - strand, within DVU2837at 2941.303 kb on - strand, within DVU2837at 2941.303 kb on - strand, within DVU2837at 2941.357 kb on + strand, within DVU2837at 2941.418 kb on + strand, within DVU2837

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,939,249 + DVU2832 0.77 +1.0
2,939,257 - DVU2832 0.79 -0.3
2,939,520 + -0.1
2,939,600 + DVU2833 0.26 +0.1
2,939,636 - DVU2833 0.37 -0.2
2,939,714 - DVU2833 0.61 +0.0
2,939,797 + DVU2833 0.86 -0.1
2,939,808 + DVU2833 0.89 +0.7
2,939,808 + DVU2833 0.89 -0.1
2,939,823 + +0.0
2,939,856 + -1.3
2,939,899 + -0.9
2,939,909 - +0.1
2,939,909 - -1.6
2,939,914 - +0.5
2,939,914 - +0.6
2,939,914 - -1.3
2,939,942 - +0.9
2,939,944 - +0.0
2,939,990 - +0.1
2,939,999 + -0.2
2,940,007 - +0.4
2,940,049 + -0.8
2,940,151 + +2.4
2,940,155 - -0.0
2,940,168 + +0.1
2,940,168 + +0.0
2,940,185 - -0.0
2,940,190 + -0.9
2,940,192 - +1.0
2,940,208 - -0.3
2,940,288 - DVU2835 0.18 +0.3
2,940,288 - DVU2835 0.18 +0.1
2,940,320 + DVU2835 0.29 +0.2
2,940,338 - DVU2835 0.36 -0.1
2,940,403 - DVU2835 0.60 +0.1
2,941,059 - +0.3
2,941,072 + -0.6
2,941,090 + -0.6
2,941,185 + -0.6
2,941,193 - -0.2
2,941,194 - +0.0
2,941,235 - -2.6
2,941,269 - -0.1
2,941,303 - DVU2837 0.13 -1.4
2,941,303 - DVU2837 0.13 +0.2
2,941,303 - DVU2837 0.13 -0.3
2,941,357 + DVU2837 0.18 -0.0
2,941,418 + DVU2837 0.23 -0.8

Or see this region's nucleotide sequence