Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2833

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2831 and DVU2832 overlap by 14 nucleotidesDVU2832 and DVU2833 are separated by 157 nucleotidesDVU2833 and DVU2835 are separated by 397 nucleotidesDVU2835 and DVU2836 are separated by 96 nucleotides DVU2831: DVU2831 - hypothetical protein (TIGR), at 2,938,713 to 2,938,907 DVU2831 DVU2832: DVU2832 - transcriptional regulator cII, putative (TIGR), at 2,938,894 to 2,939,355 DVU2832 DVU2833: DVU2833 - hypothetical protein (TIGR), at 2,939,513 to 2,939,842 DVU2833 DVU2835: DVU2835 - transcriptional regulator, putative (TIGR), at 2,940,240 to 2,940,512 DVU2835 DVU2836: DVU2836 - hypothetical protein (TIGR), at 2,940,609 to 2,941,055 DVU2836 Position (kb) 2939 2940Strain fitness (log2 ratio) -1 0 1 2at 2938.519 kb on + strandat 2938.545 kb on - strandat 2938.569 kb on + strandat 2938.569 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.629 kb on + strandat 2938.637 kb on - strandat 2938.822 kb on + strand, within DVU2831at 2938.840 kb on - strand, within DVU2831at 2938.911 kb on - strandat 2938.915 kb on - strandat 2938.930 kb on - strandat 2938.950 kb on - strand, within DVU2832at 2938.953 kb on + strand, within DVU2832at 2938.975 kb on - strand, within DVU2832at 2939.086 kb on - strand, within DVU2832at 2939.086 kb on - strand, within DVU2832at 2939.103 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.125 kb on + strand, within DVU2832at 2939.133 kb on - strand, within DVU2832at 2939.133 kb on - strand, within DVU2832at 2939.140 kb on - strand, within DVU2832at 2939.216 kb on + strand, within DVU2832at 2939.217 kb on + strand, within DVU2832at 2939.249 kb on + strand, within DVU2832at 2939.257 kb on - strand, within DVU2832at 2939.520 kb on + strandat 2939.600 kb on + strand, within DVU2833at 2939.636 kb on - strand, within DVU2833at 2939.714 kb on - strand, within DVU2833at 2939.797 kb on + strand, within DVU2833at 2939.808 kb on + strand, within DVU2833at 2939.808 kb on + strand, within DVU2833at 2939.823 kb on + strandat 2939.856 kb on + strandat 2939.899 kb on + strandat 2939.909 kb on - strandat 2939.909 kb on - strandat 2939.914 kb on - strandat 2939.914 kb on - strandat 2939.914 kb on - strandat 2939.942 kb on - strandat 2939.944 kb on - strandat 2939.990 kb on - strandat 2939.999 kb on + strandat 2940.007 kb on - strandat 2940.049 kb on + strandat 2940.151 kb on + strandat 2940.155 kb on - strandat 2940.168 kb on + strandat 2940.168 kb on + strandat 2940.185 kb on - strandat 2940.190 kb on + strandat 2940.192 kb on - strandat 2940.208 kb on - strandat 2940.288 kb on - strand, within DVU2835at 2940.288 kb on - strand, within DVU2835at 2940.320 kb on + strand, within DVU2835at 2940.338 kb on - strand, within DVU2835at 2940.403 kb on - strand, within DVU2835

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,938,519 + -0.6
2,938,545 - -0.4
2,938,569 + -0.5
2,938,569 + -0.3
2,938,629 + -0.3
2,938,629 + +0.1
2,938,629 + +0.3
2,938,629 + -0.1
2,938,629 + +0.1
2,938,637 - -0.0
2,938,822 + DVU2831 0.56 +0.1
2,938,840 - DVU2831 0.65 -0.3
2,938,911 - -0.5
2,938,915 - +0.0
2,938,930 - +0.0
2,938,950 - DVU2832 0.12 +0.6
2,938,953 + DVU2832 0.13 -0.8
2,938,975 - DVU2832 0.18 +0.8
2,939,086 - DVU2832 0.42 -0.6
2,939,086 - DVU2832 0.42 +0.6
2,939,103 + DVU2832 0.45 -0.5
2,939,125 + DVU2832 0.50 +0.8
2,939,125 + DVU2832 0.50 -0.0
2,939,125 + DVU2832 0.50 +0.2
2,939,125 + DVU2832 0.50 -0.2
2,939,125 + DVU2832 0.50 -0.2
2,939,133 - DVU2832 0.52 -1.3
2,939,133 - DVU2832 0.52 -0.3
2,939,140 - DVU2832 0.53 -0.0
2,939,216 + DVU2832 0.70 -0.4
2,939,217 + DVU2832 0.70 -0.3
2,939,249 + DVU2832 0.77 +1.0
2,939,257 - DVU2832 0.79 -0.3
2,939,520 + -0.1
2,939,600 + DVU2833 0.26 +0.1
2,939,636 - DVU2833 0.37 -0.2
2,939,714 - DVU2833 0.61 +0.0
2,939,797 + DVU2833 0.86 -0.1
2,939,808 + DVU2833 0.89 +0.7
2,939,808 + DVU2833 0.89 -0.1
2,939,823 + +0.0
2,939,856 + -1.3
2,939,899 + -0.9
2,939,909 - +0.1
2,939,909 - -1.6
2,939,914 - +0.5
2,939,914 - +0.6
2,939,914 - -1.3
2,939,942 - +0.9
2,939,944 - +0.0
2,939,990 - +0.1
2,939,999 + -0.2
2,940,007 - +0.4
2,940,049 + -0.8
2,940,151 + +2.4
2,940,155 - -0.0
2,940,168 + +0.1
2,940,168 + +0.0
2,940,185 - -0.0
2,940,190 + -0.9
2,940,192 - +1.0
2,940,208 - -0.3
2,940,288 - DVU2835 0.18 +0.3
2,940,288 - DVU2835 0.18 +0.1
2,940,320 + DVU2835 0.29 +0.2
2,940,338 - DVU2835 0.36 -0.1
2,940,403 - DVU2835 0.60 +0.1

Or see this region's nucleotide sequence