Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2581

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2580 and cheYIV overlap by 4 nucleotidescheYIV and DVU2582 are separated by 72 nucleotidesDVU2582 and DVU2583 are separated by 232 nucleotides DVU2580: DVU2580 - response regulator (TIGR), at 2,699,014 to 2,703,135 DVU2580 DVU2581: cheYIV - response regulator (TIGR), at 2,703,132 to 2,703,572 cheYIV DVU2582: DVU2582 - transcriptional regulator, TetR family (TIGR), at 2,703,645 to 2,704,232 DVU2582 DVU2583: DVU2583 - lipoprotein, putative (TIGR), at 2,704,465 to 2,704,971 DVU2583 Position (kb) 2703 2704Strain fitness (log2 ratio) -1 0 1 2at 2702.164 kb on + strand, within DVU2580at 2702.164 kb on + strand, within DVU2580at 2702.164 kb on + strand, within DVU2580at 2702.164 kb on + strand, within DVU2580at 2702.186 kb on + strand, within DVU2580at 2702.244 kb on + strand, within DVU2580at 2702.351 kb on - strand, within DVU2580at 2702.567 kb on - strand, within DVU2580at 2702.727 kb on + strandat 2702.790 kb on + strandat 2702.886 kb on - strandat 2703.002 kb on + strandat 2703.037 kb on - strandat 2703.116 kb on - strandat 2703.187 kb on - strand, within cheYIVat 2703.242 kb on + strand, within cheYIVat 2703.274 kb on - strand, within cheYIVat 2703.310 kb on + strand, within cheYIVat 2703.320 kb on + strand, within cheYIVat 2703.324 kb on - strand, within cheYIVat 2703.414 kb on + strand, within cheYIVat 2703.429 kb on - strand, within cheYIVat 2703.436 kb on - strand, within cheYIVat 2703.551 kb on + strandat 2703.567 kb on + strandat 2703.567 kb on + strandat 2703.655 kb on + strandat 2703.663 kb on - strandat 2703.665 kb on + strandat 2703.712 kb on + strand, within DVU2582at 2703.720 kb on - strand, within DVU2582at 2704.010 kb on + strand, within DVU2582at 2704.010 kb on + strand, within DVU2582at 2704.018 kb on - strand, within DVU2582at 2704.019 kb on - strand, within DVU2582at 2704.093 kb on - strand, within DVU2582at 2704.135 kb on - strand, within DVU2582at 2704.151 kb on + strand, within DVU2582at 2704.184 kb on + strandat 2704.192 kb on - strandat 2704.217 kb on - strandat 2704.376 kb on + strandat 2704.402 kb on + strandat 2704.402 kb on + strandat 2704.407 kb on + strandat 2704.410 kb on - strandat 2704.434 kb on - strandat 2704.434 kb on - strandat 2704.444 kb on - strandat 2704.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,702,164 + DVU2580 0.76 +2.0
2,702,164 + DVU2580 0.76 -1.1
2,702,164 + DVU2580 0.76 -0.5
2,702,164 + DVU2580 0.76 -0.0
2,702,186 + DVU2580 0.77 -0.9
2,702,244 + DVU2580 0.78 -0.1
2,702,351 - DVU2580 0.81 -0.6
2,702,567 - DVU2580 0.86 +1.0
2,702,727 + +0.2
2,702,790 + -1.6
2,702,886 - +1.5
2,703,002 + +0.6
2,703,037 - +0.4
2,703,116 - -0.3
2,703,187 - cheYIV DVU2581 0.12 -0.4
2,703,242 + cheYIV DVU2581 0.25 -0.8
2,703,274 - cheYIV DVU2581 0.32 -1.4
2,703,310 + cheYIV DVU2581 0.40 -0.2
2,703,320 + cheYIV DVU2581 0.43 -1.2
2,703,324 - cheYIV DVU2581 0.44 -0.2
2,703,414 + cheYIV DVU2581 0.64 -1.1
2,703,429 - cheYIV DVU2581 0.67 -1.6
2,703,436 - cheYIV DVU2581 0.69 +0.1
2,703,551 + -0.9
2,703,567 + +0.0
2,703,567 + +1.4
2,703,655 + +0.2
2,703,663 - +0.1
2,703,665 + -0.3
2,703,712 + DVU2582 0.11 +1.0
2,703,720 - DVU2582 0.13 +1.1
2,704,010 + DVU2582 0.62 +0.1
2,704,010 + DVU2582 0.62 -0.2
2,704,018 - DVU2582 0.63 +0.4
2,704,019 - DVU2582 0.64 -0.5
2,704,093 - DVU2582 0.76 -0.6
2,704,135 - DVU2582 0.83 +0.5
2,704,151 + DVU2582 0.86 +0.8
2,704,184 + +0.0
2,704,192 - +1.0
2,704,217 - -0.3
2,704,376 + +0.4
2,704,402 + -0.3
2,704,402 + +0.5
2,704,407 + +0.5
2,704,410 - -0.5
2,704,434 - -0.3
2,704,434 - +0.1
2,704,444 - -0.4
2,704,465 - +0.0

Or see this region's nucleotide sequence