Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2532

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttkt and rpe are separated by 90 nucleotidesrpe and DVU2532 are separated by 47 nucleotidesDVU2532 and pheT are separated by 24 nucleotides DVU2530: tkt - transketolase (TIGR), at 2,640,910 to 2,642,904 tkt DVU2531: rpe - ribulose-phosphate 3-epimerase (TIGR), at 2,642,995 to 2,643,663 rpe DVU2532: DVU2532 - transcriptional regulator, MerR family (TIGR), at 2,643,711 to 2,644,094 DVU2532 DVU2533: pheT - phenylalanyl-tRNA synthetase, beta subunit (TIGR), at 2,644,119 to 2,646,515 pheT Position (kb) 2643 2644 2645Strain fitness (log2 ratio) -2 -1 0 1at 2642.958 kb on - strandat 2643.845 kb on + strand, within DVU2532at 2643.893 kb on + strand, within DVU2532at 2643.901 kb on - strand, within DVU2532at 2643.961 kb on + strand, within DVU2532at 2643.994 kb on + strand, within DVU2532at 2644.088 kb on + strandat 2644.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,642,958 - +0.1
2,643,845 + DVU2532 0.35 -2.1
2,643,893 + DVU2532 0.47 -0.5
2,643,901 - DVU2532 0.49 -0.2
2,643,961 + DVU2532 0.65 +0.6
2,643,994 + DVU2532 0.74 -0.6
2,644,088 + -0.6
2,644,089 - -0.7

Or see this region's nucleotide sequence