Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2216

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2213 and DVU2214 are separated by 78 nucleotidesDVU2214 and DVU2215 are separated by 152 nucleotidesDVU2215 and infA-2 are separated by 79 nucleotidesinfA-2 and DVU2217 are separated by 534 nucleotides DVU2213: DVU2213 - nuclease domain protein (TIGR), at 2,310,270 to 2,310,971 DVU2213 DVU2214: DVU2214 - hypothetical protein (TIGR), at 2,311,050 to 2,311,223 DVU2214 DVU2215: DVU2215 - RNA-binding protein (TIGR), at 2,311,376 to 2,311,645 DVU2215 DVU2216: infA-2 - translation initiation factor IF-1 (TIGR), at 2,311,725 to 2,311,988 infA-2 DVU2217: DVU2217 - acetyltransferase, GNAT family (TIGR), at 2,312,523 to 2,313,029 DVU2217 Position (kb) 2311 2312Strain fitness (log2 ratio) -2 -1 0 1at 2310.725 kb on + strand, within DVU2213at 2310.740 kb on - strand, within DVU2213at 2310.781 kb on - strand, within DVU2213at 2310.786 kb on - strand, within DVU2213at 2310.817 kb on + strand, within DVU2213at 2310.824 kb on + strand, within DVU2213at 2310.824 kb on + strand, within DVU2213at 2310.824 kb on + strand, within DVU2213at 2310.834 kb on - strand, within DVU2213at 2310.905 kb on + strandat 2310.910 kb on + strandat 2310.918 kb on - strandat 2310.923 kb on - strandat 2310.925 kb on - strandat 2310.938 kb on - strandat 2310.941 kb on + strandat 2310.993 kb on + strandat 2311.083 kb on - strand, within DVU2214at 2311.106 kb on - strand, within DVU2214at 2311.133 kb on + strand, within DVU2214at 2311.156 kb on - strand, within DVU2214at 2311.168 kb on - strand, within DVU2214at 2311.887 kb on + strand, within infA-2at 2311.887 kb on + strand, within infA-2at 2311.929 kb on - strand, within infA-2at 2311.936 kb on + strand, within infA-2at 2311.997 kb on + strandat 2312.081 kb on - strandat 2312.125 kb on + strandat 2312.312 kb on - strandat 2312.528 kb on - strandat 2312.754 kb on - strand, within DVU2217at 2312.764 kb on - strand, within DVU2217at 2312.791 kb on + strand, within DVU2217at 2312.794 kb on - strand, within DVU2217at 2312.794 kb on - strand, within DVU2217at 2312.806 kb on - strand, within DVU2217at 2312.814 kb on - strand, within DVU2217at 2312.906 kb on - strand, within DVU2217at 2312.921 kb on - strand, within DVU2217

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,310,725 + DVU2213 0.65 -0.2
2,310,740 - DVU2213 0.67 -1.2
2,310,781 - DVU2213 0.73 -0.1
2,310,786 - DVU2213 0.74 -0.2
2,310,817 + DVU2213 0.78 -0.3
2,310,824 + DVU2213 0.79 +0.1
2,310,824 + DVU2213 0.79 -0.6
2,310,824 + DVU2213 0.79 -0.1
2,310,834 - DVU2213 0.80 +0.6
2,310,905 + -0.1
2,310,910 + -0.1
2,310,918 - -0.3
2,310,923 - +0.2
2,310,925 - +0.0
2,310,938 - +0.1
2,310,941 + -0.1
2,310,993 + +0.7
2,311,083 - DVU2214 0.19 +0.7
2,311,106 - DVU2214 0.32 -0.7
2,311,133 + DVU2214 0.48 -1.2
2,311,156 - DVU2214 0.61 -0.7
2,311,168 - DVU2214 0.68 -0.4
2,311,887 + infA-2 DVU2216 0.61 +0.0
2,311,887 + infA-2 DVU2216 0.61 -0.3
2,311,929 - infA-2 DVU2216 0.77 -2.2
2,311,936 + infA-2 DVU2216 0.80 -0.8
2,311,997 + -0.4
2,312,081 - +1.1
2,312,125 + -0.5
2,312,312 - +0.1
2,312,528 - -0.5
2,312,754 - DVU2217 0.46 +0.0
2,312,764 - DVU2217 0.48 +0.9
2,312,791 + DVU2217 0.53 +0.7
2,312,794 - DVU2217 0.53 -0.1
2,312,794 - DVU2217 0.53 -0.2
2,312,806 - DVU2217 0.56 +0.1
2,312,814 - DVU2217 0.57 -1.5
2,312,906 - DVU2217 0.76 +0.1
2,312,921 - DVU2217 0.79 -1.7

Or see this region's nucleotide sequence