Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2169

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2168 and DVU2169 are separated by 10 nucleotidesDVU2169 and DVU2170 are separated by 3 nucleotides DVU2168: DVU2168 - major head protein (TIGR), at 2,265,579 to 2,266,604 DVU2168 DVU2169: DVU2169 - conserved hypothetical protein (TIGR), at 2,266,615 to 2,266,983 DVU2169 DVU2170: DVU2170 - minor capsid protein C (TIGR), at 2,266,987 to 2,268,207 DVU2170 Position (kb) 2266 2267Strain fitness (log2 ratio) -2 -1 0 1 2at 2265.652 kb on + strandat 2265.812 kb on + strand, within DVU2168at 2265.820 kb on - strand, within DVU2168at 2265.975 kb on - strand, within DVU2168at 2266.094 kb on + strand, within DVU2168at 2266.102 kb on - strand, within DVU2168at 2266.102 kb on - strand, within DVU2168at 2266.167 kb on + strand, within DVU2168at 2266.189 kb on - strand, within DVU2168at 2266.232 kb on + strand, within DVU2168at 2266.291 kb on + strand, within DVU2168at 2266.306 kb on + strand, within DVU2168at 2266.306 kb on + strand, within DVU2168at 2266.306 kb on + strand, within DVU2168at 2266.314 kb on - strand, within DVU2168at 2266.314 kb on - strand, within DVU2168at 2266.332 kb on - strand, within DVU2168at 2266.501 kb on + strand, within DVU2168at 2266.509 kb on - strandat 2266.693 kb on + strand, within DVU2169at 2266.728 kb on + strand, within DVU2169at 2266.736 kb on + strand, within DVU2169at 2266.744 kb on - strand, within DVU2169at 2266.855 kb on + strand, within DVU2169at 2266.861 kb on + strand, within DVU2169at 2266.863 kb on - strand, within DVU2169at 2266.863 kb on - strand, within DVU2169at 2266.906 kb on - strand, within DVU2169at 2266.985 kb on + strandat 2266.992 kb on - strandat 2267.003 kb on + strandat 2267.003 kb on + strandat 2267.011 kb on - strandat 2267.011 kb on - strandat 2267.022 kb on + strandat 2267.059 kb on - strandat 2267.073 kb on - strandat 2267.078 kb on + strandat 2267.128 kb on - strand, within DVU2170at 2267.128 kb on - strand, within DVU2170at 2267.128 kb on - strand, within DVU2170at 2267.135 kb on + strand, within DVU2170at 2267.221 kb on - strand, within DVU2170at 2267.221 kb on - strand, within DVU2170at 2267.256 kb on + strand, within DVU2170at 2267.380 kb on - strand, within DVU2170at 2267.503 kb on - strand, within DVU2170at 2267.528 kb on + strand, within DVU2170at 2267.620 kb on - strand, within DVU2170at 2267.674 kb on + strand, within DVU2170at 2267.674 kb on + strand, within DVU2170at 2267.682 kb on - strand, within DVU2170at 2267.713 kb on - strand, within DVU2170at 2267.719 kb on + strand, within DVU2170at 2267.727 kb on - strand, within DVU2170at 2267.727 kb on - strand, within DVU2170at 2267.727 kb on - strand, within DVU2170at 2267.793 kb on + strand, within DVU2170at 2267.793 kb on + strand, within DVU2170at 2267.879 kb on - strand, within DVU2170at 2267.973 kb on + strand, within DVU2170at 2267.976 kb on - strand, within DVU2170

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,265,652 + -0.7
2,265,812 + DVU2168 0.23 +0.5
2,265,820 - DVU2168 0.23 -1.7
2,265,975 - DVU2168 0.39 -0.6
2,266,094 + DVU2168 0.50 -0.4
2,266,102 - DVU2168 0.51 +0.2
2,266,102 - DVU2168 0.51 -0.5
2,266,167 + DVU2168 0.57 +0.0
2,266,189 - DVU2168 0.59 -0.1
2,266,232 + DVU2168 0.64 +0.2
2,266,291 + DVU2168 0.69 -0.5
2,266,306 + DVU2168 0.71 -1.6
2,266,306 + DVU2168 0.71 +0.2
2,266,306 + DVU2168 0.71 -0.6
2,266,314 - DVU2168 0.72 -0.5
2,266,314 - DVU2168 0.72 -0.2
2,266,332 - DVU2168 0.73 -0.2
2,266,501 + DVU2168 0.90 -0.1
2,266,509 - -0.4
2,266,693 + DVU2169 0.21 -0.0
2,266,728 + DVU2169 0.31 +0.5
2,266,736 + DVU2169 0.33 +0.1
2,266,744 - DVU2169 0.35 +1.6
2,266,855 + DVU2169 0.65 +0.4
2,266,861 + DVU2169 0.67 -0.1
2,266,863 - DVU2169 0.67 -1.7
2,266,863 - DVU2169 0.67 -0.4
2,266,906 - DVU2169 0.79 +0.2
2,266,985 + -0.1
2,266,992 - -0.0
2,267,003 + -0.2
2,267,003 + -0.1
2,267,011 - -0.9
2,267,011 - +0.4
2,267,022 + +0.4
2,267,059 - +0.4
2,267,073 - -0.9
2,267,078 + -0.1
2,267,128 - DVU2170 0.12 +0.6
2,267,128 - DVU2170 0.12 -1.0
2,267,128 - DVU2170 0.12 -1.0
2,267,135 + DVU2170 0.12 +0.9
2,267,221 - DVU2170 0.19 -0.6
2,267,221 - DVU2170 0.19 -0.4
2,267,256 + DVU2170 0.22 +1.6
2,267,380 - DVU2170 0.32 +0.2
2,267,503 - DVU2170 0.42 -0.0
2,267,528 + DVU2170 0.44 -2.0
2,267,620 - DVU2170 0.52 +0.3
2,267,674 + DVU2170 0.56 -1.3
2,267,674 + DVU2170 0.56 -0.3
2,267,682 - DVU2170 0.57 +0.5
2,267,713 - DVU2170 0.59 -0.3
2,267,719 + DVU2170 0.60 +0.1
2,267,727 - DVU2170 0.61 -0.6
2,267,727 - DVU2170 0.61 +2.1
2,267,727 - DVU2170 0.61 +0.3
2,267,793 + DVU2170 0.66 -0.1
2,267,793 + DVU2170 0.66 +1.4
2,267,879 - DVU2170 0.73 -0.4
2,267,973 + DVU2170 0.81 +0.1
2,267,976 - DVU2170 0.81 -0.7

Or see this region's nucleotide sequence