Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2055

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2053 and DVU2054 overlap by 7 nucleotidesDVU2054 and metG are separated by 77 nucleotidesmetG and DVU2057 are separated by 229 nucleotides DVU2053: DVU2053 - membrane protein, putative (TIGR), at 2,130,293 to 2,130,973 DVU2053 DVU2054: DVU2054 - hypothetical protein (TIGR), at 2,130,967 to 2,131,065 DVU2054 DVU2055: metG - methionyl-tRNA synthetase (TIGR), at 2,131,143 to 2,133,134 metG DVU2057: DVU2057 - conserved hypothetical protein (TIGR), at 2,133,364 to 2,134,827 DVU2057 Position (kb) 2131 2132 2133 2134Strain fitness (log2 ratio) -1 0 1at 2130.158 kb on - strandat 2131.021 kb on + strand, within DVU2054at 2131.063 kb on - strandat 2131.560 kb on - strand, within metGat 2133.185 kb on - strandat 2133.240 kb on + strandat 2133.291 kb on - strandat 2133.296 kb on + strandat 2133.449 kb on + strandat 2133.514 kb on - strand, within DVU2057at 2133.531 kb on - strand, within DVU2057at 2133.558 kb on + strand, within DVU2057at 2133.609 kb on + strand, within DVU2057at 2133.647 kb on - strand, within DVU2057at 2133.662 kb on + strand, within DVU2057at 2133.734 kb on + strand, within DVU2057at 2133.735 kb on + strand, within DVU2057

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,130,158 - +0.3
2,131,021 + DVU2054 0.55 -1.7
2,131,063 - -1.3
2,131,560 - metG DVU2055 0.21 +0.2
2,133,185 - +0.0
2,133,240 + +0.3
2,133,291 - -0.1
2,133,296 + +0.1
2,133,449 + +0.0
2,133,514 - DVU2057 0.10 -0.3
2,133,531 - DVU2057 0.11 -0.1
2,133,558 + DVU2057 0.13 -0.6
2,133,609 + DVU2057 0.17 -0.2
2,133,647 - DVU2057 0.19 +0.7
2,133,662 + DVU2057 0.20 -0.1
2,133,734 + DVU2057 0.25 -0.3
2,133,735 + DVU2057 0.25 +0.6

Or see this region's nucleotide sequence