Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2049

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF15206 and DVU2048 are separated by 48 nucleotidesDVU2048 and DORF15229 are separated by 47 nucleotidesDORF15229 and DVU2049 are separated by 234 nucleotidesDVU2049 and DVU2051 are separated by 791 nucleotides DORF15206: DORF15206 - no description, at 2,123,167 to 2,125,602 DORF15206 DVU2048: DVU2048 - hypothetical protein (TIGR), at 2,125,651 to 2,125,821 DVU2048 DORF15229: DORF15229 - no description, at 2,125,869 to 2,126,150 DORF15229 DVU2049: DVU2049 - transposase OrfA, IS3 family, degenerate (TIGR), at 2,126,385 to 2,126,851 DVU2049 DVU2051: DVU2051 - hypothetical protein (TIGR), at 2,127,643 to 2,128,941 DVU2051 Position (kb) 2126 2127Strain fitness (log2 ratio) -1 0 1at 2125.402 kb on - strandat 2125.413 kb on + strandat 2125.414 kb on - strandat 2125.441 kb on - strandat 2125.745 kb on + strand, within DVU2048at 2126.072 kb on - strand, within DORF15229at 2126.109 kb on - strand, within DORF15229at 2126.152 kb on - strandat 2126.213 kb on + strandat 2126.324 kb on - strandat 2126.325 kb on - strandat 2126.325 kb on - strandat 2126.325 kb on - strandat 2126.404 kb on + strandat 2126.409 kb on + strandat 2126.483 kb on - strand, within DVU2049at 2126.503 kb on + strand, within DVU2049at 2126.523 kb on + strand, within DVU2049at 2126.531 kb on - strand, within DVU2049at 2126.645 kb on + strand, within DVU2049at 2126.683 kb on - strand, within DVU2049at 2126.691 kb on + strand, within DVU2049at 2126.698 kb on + strand, within DVU2049at 2126.922 kb on - strandat 2126.965 kb on + strandat 2126.973 kb on - strandat 2127.121 kb on + strandat 2127.140 kb on + strandat 2127.140 kb on + strandat 2127.148 kb on - strandat 2127.150 kb on + strandat 2127.152 kb on + strandat 2127.199 kb on + strandat 2127.200 kb on + strandat 2127.200 kb on + strandat 2127.208 kb on - strandat 2127.208 kb on - strandat 2127.221 kb on + strandat 2127.410 kb on - strandat 2127.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,125,402 - +0.8
2,125,413 + -0.8
2,125,414 - -0.3
2,125,441 - -0.7
2,125,745 + DVU2048 0.55 +1.4
2,126,072 - DORF15229 0.72 +0.2
2,126,109 - DORF15229 0.85 -0.2
2,126,152 - -0.0
2,126,213 + -0.3
2,126,324 - -0.5
2,126,325 - -0.7
2,126,325 - +0.3
2,126,325 - -0.0
2,126,404 + +0.6
2,126,409 + +0.5
2,126,483 - DVU2049 0.21 +0.1
2,126,503 + DVU2049 0.25 +0.0
2,126,523 + DVU2049 0.30 +0.4
2,126,531 - DVU2049 0.31 +0.2
2,126,645 + DVU2049 0.56 -0.4
2,126,683 - DVU2049 0.64 -0.0
2,126,691 + DVU2049 0.66 +0.8
2,126,698 + DVU2049 0.67 +0.4
2,126,922 - -0.2
2,126,965 + +1.2
2,126,973 - -1.0
2,127,121 + -0.4
2,127,140 + +0.3
2,127,140 + +0.6
2,127,148 - -0.4
2,127,150 + +0.2
2,127,152 + -1.2
2,127,199 + +0.1
2,127,200 + -1.2
2,127,200 + -0.2
2,127,208 - -0.0
2,127,208 - -0.3
2,127,221 + -0.7
2,127,410 - -0.2
2,127,555 - -1.0

Or see this region's nucleotide sequence