Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1753

Experiment: MoYLS4 with Mercury 10uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1751 and DVU1752 are separated by 380 nucleotidesDVU1752 and DVU1753 are separated by 83 nucleotidesDVU1753 and DVU1754 overlap by 4 nucleotides DVU1751: DVU1751 - hypothetical protein (TIGR), at 1,819,311 to 1,819,457 DVU1751 DVU1752: DVU1752 - hypothetical protein (TIGR), at 1,819,838 to 1,820,077 DVU1752 DVU1753: DVU1753 - hypothetical protein (TIGR), at 1,820,161 to 1,820,334 DVU1753 DVU1754: DVU1754 - hypothetical protein (TIGR), at 1,820,331 to 1,820,738 DVU1754 Position (kb) 1820 1821Strain fitness (log2 ratio) -3 -2 -1 0 1at 1819.502 kb on + strandat 1819.618 kb on + strandat 1819.770 kb on + strandat 1819.885 kb on - strand, within DVU1752at 1819.912 kb on + strand, within DVU1752at 1819.941 kb on + strand, within DVU1752at 1819.956 kb on - strand, within DVU1752at 1820.019 kb on + strand, within DVU1752at 1820.032 kb on - strand, within DVU1752at 1820.036 kb on - strand, within DVU1752at 1820.043 kb on + strand, within DVU1752at 1820.077 kb on + strandat 1820.192 kb on + strand, within DVU1753at 1820.192 kb on + strand, within DVU1753at 1820.200 kb on - strand, within DVU1753at 1820.200 kb on - strand, within DVU1753at 1820.294 kb on - strand, within DVU1753at 1820.345 kb on + strandat 1820.351 kb on - strandat 1820.355 kb on + strandat 1820.382 kb on - strand, within DVU1754at 1820.394 kb on - strand, within DVU1754at 1820.427 kb on - strand, within DVU1754at 1820.478 kb on - strand, within DVU1754at 1820.699 kb on + strandat 1820.706 kb on + strandat 1820.707 kb on - strandat 1820.714 kb on - strandat 1820.714 kb on - strandat 1820.740 kb on - strandat 1820.759 kb on + strandat 1820.767 kb on - strandat 1820.767 kb on - strandat 1820.767 kb on - strandat 1820.771 kb on + strandat 1820.784 kb on + strandat 1820.803 kb on + strandat 1820.803 kb on + strandat 1820.866 kb on + strandat 1820.928 kb on - strandat 1821.009 kb on + strandat 1821.076 kb on - strandat 1821.182 kb on - strandat 1821.205 kb on + strandat 1821.221 kb on - strandat 1821.260 kb on + strandat 1821.283 kb on - strandat 1821.290 kb on - strandat 1821.306 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
remove
1,819,502 + -0.5
1,819,618 + -0.6
1,819,770 + +0.4
1,819,885 - DVU1752 0.20 -0.2
1,819,912 + DVU1752 0.31 +0.5
1,819,941 + DVU1752 0.43 -0.5
1,819,956 - DVU1752 0.49 -0.1
1,820,019 + DVU1752 0.75 -0.3
1,820,032 - DVU1752 0.81 -0.0
1,820,036 - DVU1752 0.82 +0.1
1,820,043 + DVU1752 0.85 +0.1
1,820,077 + +0.1
1,820,192 + DVU1753 0.18 +0.1
1,820,192 + DVU1753 0.18 +0.1
1,820,200 - DVU1753 0.22 +0.4
1,820,200 - DVU1753 0.22 +0.1
1,820,294 - DVU1753 0.76 +0.4
1,820,345 + -0.4
1,820,351 - +0.8
1,820,355 + -1.4
1,820,382 - DVU1754 0.12 -0.8
1,820,394 - DVU1754 0.15 -0.1
1,820,427 - DVU1754 0.24 -0.7
1,820,478 - DVU1754 0.36 -0.1
1,820,699 + -0.2
1,820,706 + -0.7
1,820,707 - -1.6
1,820,714 - +0.3
1,820,714 - -0.3
1,820,740 - +0.9
1,820,759 + -0.0
1,820,767 - -0.5
1,820,767 - -0.2
1,820,767 - -0.4
1,820,771 + +0.3
1,820,784 + -3.0
1,820,803 + +0.4
1,820,803 + -0.2
1,820,866 + -1.9
1,820,928 - +0.0
1,821,009 + -0.1
1,821,076 - -0.2
1,821,182 - +0.2
1,821,205 + -0.9
1,821,221 - -1.1
1,821,260 + -0.1
1,821,283 - +0.2
1,821,290 - -0.0
1,821,306 - +0.2

Or see this region's nucleotide sequence