Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1720

Experiment: MoYLS4 with Mercury 10uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1718 and DVU1719 are separated by 4 nucleotidesDVU1719 and DVU1720 overlap by 4 nucleotidesDVU1720 and DVU1721 overlap by 1 nucleotides DVU1718: DVU1718 - hypothetical protein (TIGR), at 1,792,670 to 1,793,602 DVU1718 DVU1719: DVU1719 - conserved domain protein (TIGR), at 1,793,607 to 1,794,446 DVU1719 DVU1720: DVU1720 - hypothetical protein (TIGR), at 1,794,443 to 1,794,775 DVU1720 DVU1721: DVU1721 - hypothetical protein (TIGR), at 1,794,775 to 1,796,427 DVU1721 Position (kb) 1794 1795Strain fitness (log2 ratio) -2 -1 0 1at 1793.645 kb on + strandat 1793.653 kb on - strandat 1793.689 kb on - strandat 1793.713 kb on + strand, within DVU1719at 1793.713 kb on + strand, within DVU1719at 1793.742 kb on - strand, within DVU1719at 1793.883 kb on + strand, within DVU1719at 1793.908 kb on + strand, within DVU1719at 1793.958 kb on - strand, within DVU1719at 1794.006 kb on - strand, within DVU1719at 1794.014 kb on - strand, within DVU1719at 1794.016 kb on + strand, within DVU1719at 1794.016 kb on + strand, within DVU1719at 1794.018 kb on + strand, within DVU1719at 1794.018 kb on + strand, within DVU1719at 1794.024 kb on - strand, within DVU1719at 1794.063 kb on - strand, within DVU1719at 1794.086 kb on - strand, within DVU1719at 1794.088 kb on + strand, within DVU1719at 1794.129 kb on - strand, within DVU1719at 1794.154 kb on - strand, within DVU1719at 1794.157 kb on + strand, within DVU1719at 1794.157 kb on + strand, within DVU1719at 1794.165 kb on - strand, within DVU1719at 1794.195 kb on - strand, within DVU1719at 1794.290 kb on + strand, within DVU1719at 1794.384 kb on + strandat 1794.386 kb on + strandat 1794.488 kb on + strand, within DVU1720at 1794.672 kb on + strand, within DVU1720at 1794.673 kb on - strand, within DVU1720at 1794.680 kb on + strand, within DVU1720at 1794.710 kb on - strand, within DVU1720at 1794.710 kb on - strand, within DVU1720at 1794.710 kb on - strand, within DVU1720at 1794.786 kb on - strandat 1794.815 kb on + strandat 1794.855 kb on - strandat 1794.890 kb on + strandat 1794.994 kb on + strand, within DVU1721at 1795.111 kb on + strand, within DVU1721at 1795.148 kb on + strand, within DVU1721at 1795.180 kb on + strand, within DVU1721at 1795.180 kb on + strand, within DVU1721at 1795.188 kb on - strand, within DVU1721at 1795.213 kb on + strand, within DVU1721at 1795.306 kb on - strand, within DVU1721at 1795.353 kb on - strand, within DVU1721at 1795.359 kb on + strand, within DVU1721at 1795.431 kb on + strand, within DVU1721at 1795.591 kb on + strand, within DVU1721at 1795.626 kb on + strand, within DVU1721at 1795.697 kb on - strand, within DVU1721

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
remove
1,793,645 + -0.1
1,793,653 - +0.1
1,793,689 - -0.2
1,793,713 + DVU1719 0.13 -0.2
1,793,713 + DVU1719 0.13 -0.1
1,793,742 - DVU1719 0.16 -0.2
1,793,883 + DVU1719 0.33 +1.1
1,793,908 + DVU1719 0.36 +0.1
1,793,958 - DVU1719 0.42 +0.2
1,794,006 - DVU1719 0.47 -0.1
1,794,014 - DVU1719 0.48 +0.1
1,794,016 + DVU1719 0.49 -0.5
1,794,016 + DVU1719 0.49 -0.5
1,794,018 + DVU1719 0.49 +1.0
1,794,018 + DVU1719 0.49 +0.4
1,794,024 - DVU1719 0.50 +1.4
1,794,063 - DVU1719 0.54 -1.7
1,794,086 - DVU1719 0.57 -1.5
1,794,088 + DVU1719 0.57 -2.5
1,794,129 - DVU1719 0.62 +0.6
1,794,154 - DVU1719 0.65 -1.7
1,794,157 + DVU1719 0.65 -0.1
1,794,157 + DVU1719 0.65 -0.3
1,794,165 - DVU1719 0.66 +0.4
1,794,195 - DVU1719 0.70 +0.2
1,794,290 + DVU1719 0.81 +0.4
1,794,384 + +0.0
1,794,386 + +0.9
1,794,488 + DVU1720 0.14 +0.4
1,794,672 + DVU1720 0.69 +0.3
1,794,673 - DVU1720 0.69 +0.7
1,794,680 + DVU1720 0.71 +0.1
1,794,710 - DVU1720 0.80 -0.2
1,794,710 - DVU1720 0.80 -0.4
1,794,710 - DVU1720 0.80 +0.5
1,794,786 - +1.5
1,794,815 + +0.1
1,794,855 - -1.1
1,794,890 + +0.2
1,794,994 + DVU1721 0.13 +0.8
1,795,111 + DVU1721 0.20 -0.4
1,795,148 + DVU1721 0.23 +0.1
1,795,180 + DVU1721 0.25 +0.4
1,795,180 + DVU1721 0.25 -0.1
1,795,188 - DVU1721 0.25 -1.1
1,795,213 + DVU1721 0.26 -0.7
1,795,306 - DVU1721 0.32 -0.4
1,795,353 - DVU1721 0.35 +1.7
1,795,359 + DVU1721 0.35 -0.6
1,795,431 + DVU1721 0.40 +0.2
1,795,591 + DVU1721 0.49 -0.1
1,795,626 + DVU1721 0.51 -0.2
1,795,697 - DVU1721 0.56 +0.2

Or see this region's nucleotide sequence