Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1550

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1549 and DVU1550 are separated by 81 nucleotidesDVU1550 and DVU1551 are separated by 57 nucleotides DVU1549: DVU1549 - conserved hypothetical protein (TIGR), at 1,625,478 to 1,626,230 DVU1549 DVU1550: DVU1550 - phosphoglycerate mutase family protein (TIGR), at 1,626,312 to 1,626,968 DVU1550 DVU1551: DVU1551 - HD domain protein (TIGR), at 1,627,026 to 1,628,432 DVU1551 Position (kb) 1626 1627Strain fitness (log2 ratio) -2 -1 0 1at 1625.318 kb on - strandat 1625.573 kb on + strand, within DVU1549at 1625.721 kb on - strand, within DVU1549at 1625.797 kb on + strand, within DVU1549at 1625.806 kb on + strand, within DVU1549at 1625.819 kb on - strand, within DVU1549at 1625.955 kb on - strand, within DVU1549at 1626.001 kb on + strand, within DVU1549at 1626.001 kb on + strand, within DVU1549at 1626.001 kb on + strand, within DVU1549at 1626.009 kb on - strand, within DVU1549at 1626.041 kb on + strand, within DVU1549at 1626.049 kb on - strand, within DVU1549at 1626.051 kb on - strand, within DVU1549at 1626.053 kb on + strand, within DVU1549at 1626.058 kb on + strand, within DVU1549at 1626.061 kb on - strand, within DVU1549at 1626.066 kb on - strand, within DVU1549at 1626.071 kb on - strand, within DVU1549at 1626.096 kb on + strand, within DVU1549at 1626.098 kb on + strand, within DVU1549at 1626.103 kb on + strand, within DVU1549at 1626.191 kb on + strandat 1626.241 kb on + strandat 1626.259 kb on + strandat 1626.502 kb on - strand, within DVU1550at 1626.504 kb on - strand, within DVU1550at 1626.507 kb on + strand, within DVU1550at 1626.507 kb on + strand, within DVU1550at 1626.620 kb on - strand, within DVU1550at 1626.668 kb on - strand, within DVU1550at 1626.793 kb on + strand, within DVU1550at 1626.801 kb on - strand, within DVU1550at 1626.801 kb on - strand, within DVU1550at 1626.813 kb on - strand, within DVU1550at 1626.972 kb on - strandat 1626.972 kb on - strandat 1627.020 kb on - strandat 1627.123 kb on - strandat 1627.201 kb on - strand, within DVU1551at 1627.378 kb on - strand, within DVU1551at 1627.820 kb on + strand, within DVU1551at 1627.843 kb on - strand, within DVU1551at 1627.932 kb on + strand, within DVU1551at 1627.962 kb on + strand, within DVU1551

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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1,625,318 - -0.1
1,625,573 + DVU1549 0.13 -0.2
1,625,721 - DVU1549 0.32 +0.2
1,625,797 + DVU1549 0.42 -0.4
1,625,806 + DVU1549 0.44 -0.0
1,625,819 - DVU1549 0.45 -0.5
1,625,955 - DVU1549 0.63 +0.5
1,626,001 + DVU1549 0.69 -0.5
1,626,001 + DVU1549 0.69 +0.1
1,626,001 + DVU1549 0.69 -0.4
1,626,009 - DVU1549 0.71 -0.7
1,626,041 + DVU1549 0.75 +0.1
1,626,049 - DVU1549 0.76 +0.1
1,626,051 - DVU1549 0.76 -1.0
1,626,053 + DVU1549 0.76 -0.5
1,626,058 + DVU1549 0.77 -0.0
1,626,061 - DVU1549 0.77 -2.7
1,626,066 - DVU1549 0.78 -0.7
1,626,071 - DVU1549 0.79 -0.4
1,626,096 + DVU1549 0.82 -0.3
1,626,098 + DVU1549 0.82 -0.7
1,626,103 + DVU1549 0.83 -0.9
1,626,191 + -0.4
1,626,241 + -0.0
1,626,259 + +0.0
1,626,502 - DVU1550 0.29 +0.7
1,626,504 - DVU1550 0.29 +0.0
1,626,507 + DVU1550 0.30 -0.1
1,626,507 + DVU1550 0.30 -0.5
1,626,620 - DVU1550 0.47 +0.5
1,626,668 - DVU1550 0.54 -0.5
1,626,793 + DVU1550 0.73 +0.5
1,626,801 - DVU1550 0.74 -0.2
1,626,801 - DVU1550 0.74 +0.3
1,626,813 - DVU1550 0.76 +0.2
1,626,972 - -0.1
1,626,972 - -1.4
1,627,020 - -0.3
1,627,123 - -0.2
1,627,201 - DVU1551 0.12 +0.1
1,627,378 - DVU1551 0.25 -0.4
1,627,820 + DVU1551 0.56 +0.2
1,627,843 - DVU1551 0.58 -0.4
1,627,932 + DVU1551 0.64 -0.1
1,627,962 + DVU1551 0.67 -0.3

Or see this region's nucleotide sequence