Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1491

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1490 and DVU1491 are separated by 172 nucleotidesDVU1491 and DORF35362 are separated by 333 nucleotidesDORF35362 and DVU1493 are separated by 419 nucleotides DVU1490: DVU1490 - tail tape measure protein, putative (TIGR), at 1,567,152 to 1,569,950 DVU1490 DVU1491: DVU1491 - conserved hypothetical protein (TIGR), at 1,570,123 to 1,570,305 DVU1491 DORF35362: DORF35362 - no description, at 1,570,639 to 1,570,758 DORF35362 DVU1493: DVU1493 - hypothetical protein (TIGR), at 1,571,178 to 1,571,561 DVU1493 Position (kb) 1570 1571Strain fitness (log2 ratio) -1 0 1 2 3at 1569.130 kb on + strand, within DVU1490at 1569.136 kb on + strand, within DVU1490at 1569.138 kb on - strand, within DVU1490at 1569.174 kb on - strand, within DVU1490at 1569.186 kb on - strand, within DVU1490at 1569.370 kb on - strand, within DVU1490at 1569.392 kb on + strand, within DVU1490at 1569.407 kb on + strand, within DVU1490at 1569.408 kb on + strand, within DVU1490at 1569.444 kb on + strand, within DVU1490at 1569.539 kb on - strand, within DVU1490at 1569.601 kb on + strand, within DVU1490at 1569.826 kb on + strandat 1569.857 kb on - strandat 1569.864 kb on - strandat 1569.875 kb on + strandat 1569.979 kb on + strandat 1570.119 kb on - strandat 1570.148 kb on - strand, within DVU1491at 1570.197 kb on + strand, within DVU1491at 1570.205 kb on - strand, within DVU1491at 1570.236 kb on - strand, within DVU1491at 1570.299 kb on + strandat 1570.336 kb on + strandat 1570.753 kb on + strandat 1570.761 kb on - strandat 1570.761 kb on - strandat 1570.818 kb on - strandat 1570.840 kb on - strandat 1570.922 kb on - strandat 1571.004 kb on - strandat 1571.050 kb on - strandat 1571.060 kb on + strandat 1571.099 kb on + strandat 1571.104 kb on + strandat 1571.104 kb on + strandat 1571.112 kb on - strandat 1571.112 kb on - strandat 1571.136 kb on + strandat 1571.206 kb on + strandat 1571.206 kb on + strandat 1571.237 kb on - strand, within DVU1493at 1571.284 kb on + strand, within DVU1493

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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1,569,130 + DVU1490 0.71 +0.3
1,569,136 + DVU1490 0.71 +2.0
1,569,138 - DVU1490 0.71 -0.2
1,569,174 - DVU1490 0.72 -0.2
1,569,186 - DVU1490 0.73 +0.6
1,569,370 - DVU1490 0.79 -0.8
1,569,392 + DVU1490 0.80 -0.4
1,569,407 + DVU1490 0.81 +0.3
1,569,408 + DVU1490 0.81 +0.6
1,569,444 + DVU1490 0.82 -0.3
1,569,539 - DVU1490 0.85 -0.2
1,569,601 + DVU1490 0.87 +0.0
1,569,826 + -0.8
1,569,857 - +0.2
1,569,864 - +0.0
1,569,875 + +0.9
1,569,979 + -0.5
1,570,119 - -0.2
1,570,148 - DVU1491 0.14 +1.0
1,570,197 + DVU1491 0.40 +2.2
1,570,205 - DVU1491 0.45 +0.4
1,570,236 - DVU1491 0.62 -0.1
1,570,299 + -0.9
1,570,336 + -0.2
1,570,753 + +2.8
1,570,761 - -0.6
1,570,761 - +0.2
1,570,818 - -0.7
1,570,840 - +0.0
1,570,922 - +0.2
1,571,004 - -0.6
1,571,050 - -0.3
1,571,060 + -0.0
1,571,099 + +2.0
1,571,104 + -0.5
1,571,104 + +1.0
1,571,112 - +0.4
1,571,112 - -0.7
1,571,136 + -0.4
1,571,206 + -0.5
1,571,206 + -0.0
1,571,237 - DVU1493 0.15 -0.1
1,571,284 + DVU1493 0.28 -1.1

Or see this region's nucleotide sequence