Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1266

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1265 and DVU1266 are separated by 450 nucleotidesDVU1266 and DVU1267 are separated by 10 nucleotidesDVU1267 and DVU1268 overlap by 4 nucleotides DVU1265: DVU1265 - hypothetical protein (TIGR), at 1,353,191 to 1,353,940 DVU1265 DVU1266: DVU1266 - hypothetical protein (TIGR), at 1,354,391 to 1,357,828 DVU1266 DVU1267: DVU1267 - hypothetical protein (TIGR), at 1,357,839 to 1,358,522 DVU1267 DVU1268: DVU1268 - hypothetical protein (TIGR), at 1,358,519 to 1,358,932 DVU1268 Position (kb) 1354 1355 1356 1357 1358Strain fitness (log2 ratio) -1 0 1 2at 1353.529 kb on - strand, within DVU1265at 1353.662 kb on + strand, within DVU1265at 1353.678 kb on - strand, within DVU1265at 1353.678 kb on - strand, within DVU1265at 1353.768 kb on + strand, within DVU1265at 1353.851 kb on - strand, within DVU1265at 1353.974 kb on + strandat 1353.974 kb on + strandat 1353.975 kb on - strandat 1354.061 kb on + strandat 1354.136 kb on - strandat 1354.136 kb on - strandat 1354.161 kb on + strandat 1354.239 kb on - strandat 1354.248 kb on + strandat 1354.389 kb on + strandat 1354.396 kb on + strandat 1354.444 kb on + strandat 1354.514 kb on + strandat 1354.515 kb on + strandat 1354.522 kb on - strandat 1354.522 kb on - strandat 1354.526 kb on + strandat 1354.630 kb on + strandat 1354.661 kb on - strandat 1354.667 kb on - strandat 1354.679 kb on - strandat 1354.782 kb on + strand, within DVU1266at 1354.813 kb on - strand, within DVU1266at 1354.831 kb on + strand, within DVU1266at 1355.022 kb on - strand, within DVU1266at 1355.069 kb on - strand, within DVU1266at 1355.134 kb on + strand, within DVU1266at 1355.142 kb on - strand, within DVU1266at 1355.244 kb on + strand, within DVU1266at 1355.244 kb on + strand, within DVU1266at 1355.244 kb on + strand, within DVU1266at 1355.434 kb on + strand, within DVU1266at 1355.445 kb on + strand, within DVU1266at 1355.449 kb on - strand, within DVU1266at 1355.498 kb on - strand, within DVU1266at 1355.512 kb on + strand, within DVU1266at 1355.515 kb on + strand, within DVU1266at 1355.602 kb on - strand, within DVU1266at 1355.786 kb on + strand, within DVU1266at 1355.831 kb on - strand, within DVU1266at 1355.833 kb on + strand, within DVU1266at 1355.841 kb on - strand, within DVU1266at 1355.960 kb on + strand, within DVU1266at 1356.098 kb on - strand, within DVU1266at 1356.237 kb on + strand, within DVU1266at 1356.333 kb on - strand, within DVU1266at 1356.333 kb on - strand, within DVU1266at 1356.369 kb on + strand, within DVU1266at 1356.369 kb on + strand, within DVU1266at 1356.377 kb on - strand, within DVU1266at 1356.432 kb on - strand, within DVU1266at 1356.438 kb on + strand, within DVU1266at 1356.672 kb on + strand, within DVU1266at 1356.760 kb on + strand, within DVU1266at 1356.768 kb on - strand, within DVU1266at 1356.885 kb on + strand, within DVU1266at 1356.915 kb on + strand, within DVU1266at 1356.929 kb on + strand, within DVU1266at 1356.934 kb on + strand, within DVU1266at 1356.942 kb on - strand, within DVU1266at 1356.994 kb on + strand, within DVU1266at 1357.005 kb on - strand, within DVU1266at 1357.028 kb on + strand, within DVU1266at 1357.071 kb on + strand, within DVU1266at 1357.096 kb on + strand, within DVU1266at 1357.148 kb on + strand, within DVU1266at 1357.153 kb on + strand, within DVU1266at 1357.211 kb on + strand, within DVU1266at 1357.366 kb on + strand, within DVU1266at 1357.373 kb on + strand, within DVU1266at 1357.375 kb on - strand, within DVU1266at 1357.395 kb on + strand, within DVU1266at 1357.465 kb on - strand, within DVU1266at 1357.578 kb on - strandat 1357.585 kb on + strandat 1357.600 kb on + strandat 1357.600 kb on + strandat 1357.622 kb on - strandat 1357.721 kb on - strandat 1357.823 kb on - strandat 1357.823 kb on - strandat 1357.859 kb on - strandat 1357.895 kb on + strandat 1358.017 kb on + strand, within DVU1267at 1358.242 kb on - strand, within DVU1267at 1358.242 kb on - strand, within DVU1267at 1358.242 kb on - strand, within DVU1267at 1358.345 kb on - strand, within DVU1267at 1358.354 kb on + strand, within DVU1267at 1358.409 kb on - strand, within DVU1267at 1358.430 kb on - strand, within DVU1267at 1358.491 kb on - strandat 1358.496 kb on - strandat 1358.530 kb on + strandat 1358.591 kb on + strand, within DVU1268at 1358.655 kb on - strand, within DVU1268at 1358.683 kb on - strand, within DVU1268at 1358.688 kb on + strand, within DVU1268at 1358.729 kb on + strand, within DVU1268at 1358.738 kb on + strand, within DVU1268at 1358.756 kb on + strand, within DVU1268at 1358.803 kb on + strand, within DVU1268

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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1,353,529 - DVU1265 0.45 -0.2
1,353,662 + DVU1265 0.63 -0.1
1,353,678 - DVU1265 0.65 +0.1
1,353,678 - DVU1265 0.65 -0.1
1,353,768 + DVU1265 0.77 -0.4
1,353,851 - DVU1265 0.88 +0.5
1,353,974 + -0.2
1,353,974 + -0.0
1,353,975 - +0.4
1,354,061 + -0.8
1,354,136 - +0.2
1,354,136 - -0.3
1,354,161 + +0.3
1,354,239 - +0.4
1,354,248 + -1.2
1,354,389 + -0.0
1,354,396 + +1.7
1,354,444 + -0.6
1,354,514 + +0.7
1,354,515 + +0.0
1,354,522 - -0.1
1,354,522 - +0.2
1,354,526 + +0.9
1,354,630 + +0.3
1,354,661 - -0.0
1,354,667 - +0.2
1,354,679 - +1.5
1,354,782 + DVU1266 0.11 +0.2
1,354,813 - DVU1266 0.12 -0.3
1,354,831 + DVU1266 0.13 +0.2
1,355,022 - DVU1266 0.18 -0.1
1,355,069 - DVU1266 0.20 +0.8
1,355,134 + DVU1266 0.22 -0.3
1,355,142 - DVU1266 0.22 +0.4
1,355,244 + DVU1266 0.25 +0.1
1,355,244 + DVU1266 0.25 -1.0
1,355,244 + DVU1266 0.25 +2.3
1,355,434 + DVU1266 0.30 -0.4
1,355,445 + DVU1266 0.31 +0.0
1,355,449 - DVU1266 0.31 +0.1
1,355,498 - DVU1266 0.32 +0.5
1,355,512 + DVU1266 0.33 +1.0
1,355,515 + DVU1266 0.33 +0.5
1,355,602 - DVU1266 0.35 +0.8
1,355,786 + DVU1266 0.41 +2.3
1,355,831 - DVU1266 0.42 +0.2
1,355,833 + DVU1266 0.42 -0.1
1,355,841 - DVU1266 0.42 +0.5
1,355,960 + DVU1266 0.46 -0.1
1,356,098 - DVU1266 0.50 +0.0
1,356,237 + DVU1266 0.54 +0.1
1,356,333 - DVU1266 0.56 -1.2
1,356,333 - DVU1266 0.56 +0.1
1,356,369 + DVU1266 0.58 +1.0
1,356,369 + DVU1266 0.58 +0.8
1,356,377 - DVU1266 0.58 +0.4
1,356,432 - DVU1266 0.59 +0.1
1,356,438 + DVU1266 0.60 +0.1
1,356,672 + DVU1266 0.66 +0.9
1,356,760 + DVU1266 0.69 -0.2
1,356,768 - DVU1266 0.69 -0.0
1,356,885 + DVU1266 0.73 -0.3
1,356,915 + DVU1266 0.73 -0.1
1,356,929 + DVU1266 0.74 +0.9
1,356,934 + DVU1266 0.74 -0.7
1,356,942 - DVU1266 0.74 -1.2
1,356,994 + DVU1266 0.76 +0.3
1,357,005 - DVU1266 0.76 +0.7
1,357,028 + DVU1266 0.77 +0.1
1,357,071 + DVU1266 0.78 +0.4
1,357,096 + DVU1266 0.79 +0.2
1,357,148 + DVU1266 0.80 +0.4
1,357,153 + DVU1266 0.80 -0.3
1,357,211 + DVU1266 0.82 -0.0
1,357,366 + DVU1266 0.87 +0.0
1,357,373 + DVU1266 0.87 -0.4
1,357,375 - DVU1266 0.87 -0.3
1,357,395 + DVU1266 0.87 -1.3
1,357,465 - DVU1266 0.89 +0.1
1,357,578 - -0.1
1,357,585 + +0.5
1,357,600 + -0.5
1,357,600 + -0.4
1,357,622 - +0.5
1,357,721 - +1.6
1,357,823 - -0.8
1,357,823 - -0.2
1,357,859 - +0.2
1,357,895 + -0.4
1,358,017 + DVU1267 0.26 +0.2
1,358,242 - DVU1267 0.59 -0.1
1,358,242 - DVU1267 0.59 -1.1
1,358,242 - DVU1267 0.59 +0.2
1,358,345 - DVU1267 0.74 -0.1
1,358,354 + DVU1267 0.75 +0.9
1,358,409 - DVU1267 0.83 -0.1
1,358,430 - DVU1267 0.86 +1.3
1,358,491 - -0.1
1,358,496 - +1.9
1,358,530 + +0.0
1,358,591 + DVU1268 0.17 +0.3
1,358,655 - DVU1268 0.33 -1.1
1,358,683 - DVU1268 0.40 -0.2
1,358,688 + DVU1268 0.41 -0.1
1,358,729 + DVU1268 0.51 +1.1
1,358,738 + DVU1268 0.53 -0.1
1,358,756 + DVU1268 0.57 +0.3
1,358,803 + DVU1268 0.69 +0.2

Or see this region's nucleotide sequence