Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1264

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpppA and DVU1264 are separated by 307 nucleotidesDVU1264 and DVU1265 are separated by 10 nucleotides DVU1263: pppA - type IV prepilin-like proteins leader peptidase (TIGR), at 1,351,308 to 1,352,111 pppA DVU1264: DVU1264 - transglycosylase SLT domain protein (TIGR), at 1,352,419 to 1,353,180 DVU1264 DVU1265: DVU1265 - hypothetical protein (TIGR), at 1,353,191 to 1,353,940 DVU1265 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -2 -1 0 1 2at 1351.527 kb on + strand, within pppAat 1351.541 kb on + strand, within pppAat 1351.615 kb on - strand, within pppAat 1351.632 kb on + strand, within pppAat 1351.790 kb on - strand, within pppAat 1351.790 kb on - strand, within pppAat 1351.839 kb on + strand, within pppAat 1351.851 kb on + strand, within pppAat 1351.861 kb on - strand, within pppAat 1351.877 kb on + strand, within pppAat 1352.138 kb on + strandat 1352.253 kb on - strandat 1352.282 kb on - strandat 1352.339 kb on + strandat 1352.342 kb on - strandat 1352.347 kb on - strandat 1352.402 kb on - strandat 1352.404 kb on - strandat 1352.406 kb on - strandat 1352.415 kb on + strandat 1352.496 kb on - strand, within DVU1264at 1352.577 kb on + strand, within DVU1264at 1352.605 kb on - strand, within DVU1264at 1352.617 kb on + strand, within DVU1264at 1352.642 kb on - strand, within DVU1264at 1352.702 kb on - strand, within DVU1264at 1352.745 kb on + strand, within DVU1264at 1352.796 kb on - strand, within DVU1264at 1353.004 kb on - strand, within DVU1264at 1353.065 kb on + strand, within DVU1264at 1353.075 kb on + strand, within DVU1264at 1353.078 kb on - strand, within DVU1264at 1353.083 kb on - strand, within DVU1264at 1353.083 kb on - strand, within DVU1264at 1353.109 kb on + strandat 1353.116 kb on - strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.121 kb on + strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.129 kb on - strandat 1353.139 kb on - strandat 1353.143 kb on + strandat 1353.185 kb on - strandat 1353.231 kb on + strandat 1353.231 kb on + strandat 1353.258 kb on - strandat 1353.284 kb on + strand, within DVU1265at 1353.292 kb on - strand, within DVU1265at 1353.341 kb on + strand, within DVU1265at 1353.529 kb on - strand, within DVU1265at 1353.662 kb on + strand, within DVU1265at 1353.678 kb on - strand, within DVU1265at 1353.678 kb on - strand, within DVU1265at 1353.768 kb on + strand, within DVU1265at 1353.851 kb on - strand, within DVU1265at 1353.974 kb on + strandat 1353.974 kb on + strandat 1353.975 kb on - strandat 1354.061 kb on + strandat 1354.136 kb on - strandat 1354.136 kb on - strandat 1354.161 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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1,351,527 + pppA DVU1263 0.27 -0.3
1,351,541 + pppA DVU1263 0.29 +0.1
1,351,615 - pppA DVU1263 0.38 +0.4
1,351,632 + pppA DVU1263 0.40 +0.0
1,351,790 - pppA DVU1263 0.60 +2.0
1,351,790 - pppA DVU1263 0.60 +0.4
1,351,839 + pppA DVU1263 0.66 -0.4
1,351,851 + pppA DVU1263 0.68 -0.3
1,351,861 - pppA DVU1263 0.69 +0.9
1,351,877 + pppA DVU1263 0.71 -1.0
1,352,138 + -0.1
1,352,253 - -0.9
1,352,282 - -0.6
1,352,339 + -0.7
1,352,342 - +0.1
1,352,347 - -0.6
1,352,402 - +0.7
1,352,404 - -0.5
1,352,406 - +0.2
1,352,415 + +0.7
1,352,496 - DVU1264 0.10 +0.8
1,352,577 + DVU1264 0.21 +0.1
1,352,605 - DVU1264 0.24 +1.7
1,352,617 + DVU1264 0.26 +1.1
1,352,642 - DVU1264 0.29 +0.1
1,352,702 - DVU1264 0.37 +0.0
1,352,745 + DVU1264 0.43 +0.3
1,352,796 - DVU1264 0.49 -1.6
1,353,004 - DVU1264 0.77 +0.8
1,353,065 + DVU1264 0.85 +0.7
1,353,075 + DVU1264 0.86 -0.6
1,353,078 - DVU1264 0.86 +0.4
1,353,083 - DVU1264 0.87 +0.3
1,353,083 - DVU1264 0.87 +0.5
1,353,109 + -0.7
1,353,116 - +0.2
1,353,121 + -0.0
1,353,121 + +0.4
1,353,121 + +0.2
1,353,121 + +0.2
1,353,121 + +0.6
1,353,129 - -1.4
1,353,129 - -0.5
1,353,129 - -0.2
1,353,129 - -0.3
1,353,129 - +0.5
1,353,139 - -0.2
1,353,143 + +0.2
1,353,185 - +0.0
1,353,231 + -1.9
1,353,231 + +0.2
1,353,258 - -0.5
1,353,284 + DVU1265 0.12 -0.1
1,353,292 - DVU1265 0.13 -0.1
1,353,341 + DVU1265 0.20 +0.2
1,353,529 - DVU1265 0.45 -0.2
1,353,662 + DVU1265 0.63 -0.1
1,353,678 - DVU1265 0.65 +0.1
1,353,678 - DVU1265 0.65 -0.1
1,353,768 + DVU1265 0.77 -0.4
1,353,851 - DVU1265 0.88 +0.5
1,353,974 + -0.2
1,353,974 + -0.0
1,353,975 - +0.4
1,354,061 + -0.8
1,354,136 - +0.2
1,354,136 - -0.3
1,354,161 + +0.3

Or see this region's nucleotide sequence