Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1175

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmviN-1 and DVU1174 are separated by 334 nucleotidesDVU1174 and DVU1175 are separated by 36 nucleotidesDVU1175 and DVU1176 are separated by 325 nucleotides DVU1173: mviN-1 - integral membrane protein MviN (TIGR), at 1,264,555 to 1,266,111 mviN-1 DVU1174: DVU1174 - hypothetical protein (TIGR), at 1,266,446 to 1,266,823 DVU1174 DVU1175: DVU1175 - hypothetical protein (TIGR), at 1,266,860 to 1,267,153 DVU1175 DVU1176: DVU1176 - hypothetical protein (TIGR), at 1,267,479 to 1,268,036 DVU1176 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -2 -1 0 1at 1266.107 kb on + strandat 1266.108 kb on - strandat 1266.120 kb on + strandat 1266.138 kb on + strandat 1266.146 kb on - strandat 1266.229 kb on + strandat 1266.258 kb on - strandat 1266.430 kb on - strandat 1266.430 kb on - strandat 1266.451 kb on + strandat 1266.476 kb on + strandat 1266.531 kb on - strand, within DVU1174at 1266.719 kb on - strand, within DVU1174at 1266.744 kb on - strand, within DVU1174at 1266.755 kb on + strand, within DVU1174at 1266.882 kb on - strandat 1266.976 kb on - strand, within DVU1175at 1267.029 kb on + strand, within DVU1175at 1267.340 kb on + strandat 1267.483 kb on - strandat 1267.541 kb on - strand, within DVU1176at 1267.546 kb on + strand, within DVU1176at 1267.590 kb on + strand, within DVU1176at 1267.590 kb on + strand, within DVU1176at 1267.619 kb on + strand, within DVU1176at 1267.671 kb on - strand, within DVU1176at 1267.728 kb on + strand, within DVU1176at 1267.752 kb on - strand, within DVU1176at 1267.754 kb on + strand, within DVU1176at 1267.754 kb on + strand, within DVU1176at 1267.757 kb on - strand, within DVU1176at 1267.762 kb on - strand, within DVU1176at 1267.856 kb on - strand, within DVU1176at 1267.866 kb on - strand, within DVU1176at 1267.881 kb on - strand, within DVU1176at 1267.919 kb on + strand, within DVU1176at 1267.927 kb on - strand, within DVU1176at 1267.960 kb on - strand, within DVU1176at 1267.982 kb on - strandat 1267.993 kb on - strandat 1267.993 kb on - strandat 1268.030 kb on + strandat 1268.030 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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1,266,107 + +1.7
1,266,108 - -2.2
1,266,120 + -0.4
1,266,138 + -0.0
1,266,146 - -0.7
1,266,229 + -0.0
1,266,258 - +0.3
1,266,430 - -0.7
1,266,430 - -0.7
1,266,451 + -0.4
1,266,476 + +0.8
1,266,531 - DVU1174 0.22 -1.2
1,266,719 - DVU1174 0.72 +0.3
1,266,744 - DVU1174 0.79 +0.5
1,266,755 + DVU1174 0.82 +0.3
1,266,882 - +0.2
1,266,976 - DVU1175 0.39 +0.1
1,267,029 + DVU1175 0.57 +0.1
1,267,340 + -0.2
1,267,483 - +1.0
1,267,541 - DVU1176 0.11 -1.0
1,267,546 + DVU1176 0.12 +0.1
1,267,590 + DVU1176 0.20 +0.6
1,267,590 + DVU1176 0.20 -0.0
1,267,619 + DVU1176 0.25 -0.4
1,267,671 - DVU1176 0.34 -0.1
1,267,728 + DVU1176 0.45 +0.6
1,267,752 - DVU1176 0.49 -0.3
1,267,754 + DVU1176 0.49 +0.0
1,267,754 + DVU1176 0.49 +0.1
1,267,757 - DVU1176 0.50 +1.4
1,267,762 - DVU1176 0.51 +0.4
1,267,856 - DVU1176 0.68 -0.4
1,267,866 - DVU1176 0.69 -0.3
1,267,881 - DVU1176 0.72 -0.2
1,267,919 + DVU1176 0.79 -2.0
1,267,927 - DVU1176 0.80 +0.1
1,267,960 - DVU1176 0.86 +0.1
1,267,982 - +1.3
1,267,993 - -0.4
1,267,993 - -0.3
1,268,030 + -0.1
1,268,030 + -1.8

Or see this region's nucleotide sequence