Experiment: MoYLS4 with Mercury 10uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0106 and DORF2077 are separated by 706 nucleotides DORF2077 and DVUA0108 overlap by 76 nucleotides DVUA0108 and DVUA0109 are separated by 8 nucleotides
DVUA0106: DVUA0106 - type III secretion target, YopN family (TIGR), at 143,522 to 144,646
DVUA0106
DORF2077: DORF2077 - SEED: FIG00603320: hypothetical protein, at 145,353 to 145,655
DORF2077
DVUA0108: DVUA0108 - hypothetical protein (TIGR), at 145,580 to 146,200
DVUA0108
DVUA0109: DVUA0109 - type III secretion system chaperone, LcrH/SycD family (TIGR), at 146,209 to 146,709
DVUA0109
Position (kb) 145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.353 kb on + strand, within DVUA0106 at 144.353 kb on + strand, within DVUA0106 at 144.353 kb on + strand, within DVUA0106 at 144.353 kb on + strand, within DVUA0106 at 144.361 kb on - strand, within DVUA0106 at 144.391 kb on - strand, within DVUA0106 at 144.439 kb on - strand, within DVUA0106 at 144.488 kb on + strand, within DVUA0106 at 144.551 kb on + strand at 144.559 kb on - strand at 144.578 kb on - strand at 144.584 kb on + strand at 144.585 kb on + strand at 144.600 kb on + strand at 144.836 kb on + strand at 144.842 kb on + strand at 144.874 kb on + strand at 144.906 kb on + strand at 144.914 kb on - strand at 144.941 kb on - strand at 144.977 kb on + strand at 144.985 kb on - strand at 145.013 kb on + strand at 145.030 kb on + strand at 145.064 kb on - strand at 145.206 kb on + strand at 145.214 kb on - strand at 145.335 kb on - strand at 145.335 kb on - strand at 145.343 kb on - strand at 145.400 kb on - strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.448 kb on + strand, within DORF2077 at 145.466 kb on + strand, within DORF2077 at 145.495 kb on - strand, within DORF2077 at 145.517 kb on + strand, within DORF2077 at 145.543 kb on - strand, within DORF2077 at 145.577 kb on + strand, within DORF2077 at 145.580 kb on + strand at 145.599 kb on + strand at 145.740 kb on + strand, within DVUA0108 at 145.766 kb on - strand, within DVUA0108 at 145.838 kb on + strand, within DVUA0108 at 145.875 kb on + strand, within DVUA0108 at 145.906 kb on - strand, within DVUA0108 at 145.987 kb on + strand, within DVUA0108 at 146.011 kb on + strand, within DVUA0108 at 146.011 kb on + strand, within DVUA0108 at 146.018 kb on + strand, within DVUA0108 at 146.044 kb on + strand, within DVUA0108 at 146.071 kb on - strand, within DVUA0108 at 146.089 kb on - strand, within DVUA0108 at 146.112 kb on - strand, within DVUA0108 at 146.127 kb on - strand, within DVUA0108 at 146.127 kb on - strand, within DVUA0108 at 146.137 kb on + strand, within DVUA0108 at 146.228 kb on - strand at 146.307 kb on + strand, within DVUA0109 at 146.359 kb on - strand, within DVUA0109 at 146.359 kb on - strand, within DVUA0109 at 146.400 kb on - strand, within DVUA0109 at 146.431 kb on + strand, within DVUA0109 at 146.447 kb on + strand, within DVUA0109 at 146.466 kb on + strand, within DVUA0109 at 146.567 kb on + strand, within DVUA0109 at 146.585 kb on - strand, within DVUA0109 at 146.614 kb on - strand, within DVUA0109
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM remove 144,353 + DVUA0106 0.74 -0.5 144,353 + DVUA0106 0.74 -0.7 144,353 + DVUA0106 0.74 -0.1 144,353 + DVUA0106 0.74 +1.2 144,361 - DVUA0106 0.75 +0.1 144,391 - DVUA0106 0.77 -0.1 144,439 - DVUA0106 0.82 -0.0 144,488 + DVUA0106 0.86 -0.3 144,551 + +0.6 144,559 - -0.0 144,578 - -0.3 144,584 + -0.6 144,585 + -0.9 144,600 + +0.0 144,836 + -0.8 144,842 + -0.7 144,874 + -0.1 144,906 + -0.7 144,914 - +0.2 144,941 - -0.5 144,977 + -0.9 144,985 - +0.4 145,013 + +0.8 145,030 + -0.1 145,064 - -0.0 145,206 + -2.2 145,214 - -0.2 145,335 - -0.5 145,335 - -0.1 145,343 - +0.1 145,400 - DORF2077 0.16 +0.5 145,448 + DORF2077 0.31 -0.3 145,448 + DORF2077 0.31 -0.2 145,466 + DORF2077 0.37 +0.3 145,495 - DORF2077 0.47 +0.6 145,517 + DORF2077 0.54 -0.3 145,543 - DORF2077 0.63 +0.3 145,577 + DORF2077 0.74 -0.2 145,580 + -0.3 145,599 + -0.7 145,740 + DVUA0108 0.26 -0.7 145,766 - DVUA0108 0.30 +0.0 145,838 + DVUA0108 0.42 -0.3 145,875 + DVUA0108 0.48 -0.1 145,906 - DVUA0108 0.52 -0.9 145,987 + DVUA0108 0.66 -0.2 146,011 + DVUA0108 0.69 +0.3 146,011 + DVUA0108 0.69 -0.3 146,018 + DVUA0108 0.71 -0.0 146,044 + DVUA0108 0.75 -0.2 146,071 - DVUA0108 0.79 +0.3 146,089 - DVUA0108 0.82 +0.5 146,112 - DVUA0108 0.86 +0.1 146,127 - DVUA0108 0.88 -0.0 146,127 - DVUA0108 0.88 +0.3 146,137 + DVUA0108 0.90 +0.5 146,228 - -0.0 146,307 + DVUA0109 0.20 -1.4 146,359 - DVUA0109 0.30 +0.3 146,359 - DVUA0109 0.30 +0.6 146,400 - DVUA0109 0.38 +1.0 146,431 + DVUA0109 0.44 +2.0 146,447 + DVUA0109 0.48 -0.6 146,466 + DVUA0109 0.51 -0.8 146,567 + DVUA0109 0.71 -0.1 146,585 - DVUA0109 0.75 +0.3 146,614 - DVUA0109 0.81 +0.1
Or see this region's nucleotide sequence