Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3304

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlon and DVU3304 overlap by 4 nucleotidesDVU3304 and atoC overlap by 4 nucleotides DVU3303: lon - ATP-dependent protease La, truncation (TIGR), at 3,479,157 to 3,481,265 lon DVU3304: DVU3304 - SEED: integral membrane sensor signal transduction histidine kinase, at 3,481,262 to 3,482,740 DVU3304 DVU3305: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 3,482,737 to 3,484,092 atoC Position (kb) 3481 3482 3483Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3480.284 kb on - strand, within lonat 3480.318 kb on + strand, within lonat 3480.358 kb on + strand, within lonat 3480.367 kb on - strand, within lonat 3480.374 kb on - strand, within lonat 3480.430 kb on + strand, within lonat 3480.430 kb on + strand, within lonat 3480.486 kb on + strand, within lonat 3480.486 kb on + strand, within lonat 3480.491 kb on + strand, within lonat 3480.514 kb on - strand, within lonat 3480.541 kb on + strand, within lonat 3480.549 kb on - strand, within lonat 3480.559 kb on - strand, within lonat 3480.584 kb on - strand, within lonat 3480.619 kb on + strand, within lonat 3480.624 kb on + strand, within lonat 3480.637 kb on - strand, within lonat 3480.649 kb on - strand, within lonat 3480.739 kb on + strand, within lonat 3480.747 kb on - strand, within lonat 3480.749 kb on + strand, within lonat 3480.761 kb on + strand, within lonat 3480.805 kb on - strand, within lonat 3480.828 kb on + strand, within lonat 3480.828 kb on + strand, within lonat 3480.836 kb on - strand, within lonat 3480.836 kb on - strand, within lonat 3480.836 kb on - strand, within lonat 3480.859 kb on + strand, within lonat 3480.889 kb on + strand, within lonat 3480.927 kb on + strand, within lonat 3480.943 kb on + strand, within lonat 3481.005 kb on + strand, within lonat 3481.118 kb on - strandat 3481.129 kb on + strandat 3481.158 kb on + strandat 3481.166 kb on - strandat 3481.203 kb on - strandat 3481.225 kb on + strandat 3481.243 kb on - strandat 3481.296 kb on + strandat 3481.320 kb on + strandat 3481.363 kb on + strandat 3481.363 kb on + strandat 3481.371 kb on - strandat 3481.371 kb on - strandat 3481.401 kb on + strandat 3481.409 kb on - strandat 3481.466 kb on - strand, within DVU3304at 3481.484 kb on + strand, within DVU3304at 3481.492 kb on - strand, within DVU3304at 3481.497 kb on - strand, within DVU3304at 3481.497 kb on - strand, within DVU3304at 3481.521 kb on - strand, within DVU3304at 3481.568 kb on - strand, within DVU3304at 3481.697 kb on + strand, within DVU3304at 3481.721 kb on + strand, within DVU3304at 3481.753 kb on - strand, within DVU3304at 3481.753 kb on - strand, within DVU3304at 3481.851 kb on + strand, within DVU3304at 3481.859 kb on - strand, within DVU3304at 3481.930 kb on + strand, within DVU3304at 3481.986 kb on + strand, within DVU3304at 3482.019 kb on - strand, within DVU3304at 3482.027 kb on - strand, within DVU3304at 3482.031 kb on - strand, within DVU3304at 3482.063 kb on - strand, within DVU3304at 3482.157 kb on + strand, within DVU3304at 3482.188 kb on - strand, within DVU3304at 3482.201 kb on + strand, within DVU3304at 3482.201 kb on + strand, within DVU3304at 3482.223 kb on + strand, within DVU3304at 3482.400 kb on - strand, within DVU3304at 3482.400 kb on - strand, within DVU3304at 3482.402 kb on - strand, within DVU3304at 3482.424 kb on + strand, within DVU3304at 3482.424 kb on + strand, within DVU3304at 3482.437 kb on - strand, within DVU3304at 3482.496 kb on + strand, within DVU3304at 3482.522 kb on + strand, within DVU3304at 3482.529 kb on - strand, within DVU3304at 3482.608 kb on - strandat 3482.609 kb on - strandat 3482.686 kb on - strandat 3482.833 kb on - strandat 3482.838 kb on - strandat 3482.872 kb on + strandat 3482.872 kb on + strandat 3482.889 kb on + strand, within atoCat 3482.937 kb on + strand, within atoCat 3482.987 kb on + strand, within atoCat 3482.999 kb on + strand, within atoCat 3483.004 kb on + strand, within atoCat 3483.007 kb on - strand, within atoCat 3483.026 kb on - strand, within atoCat 3483.028 kb on + strand, within atoCat 3483.045 kb on + strand, within atoCat 3483.083 kb on - strand, within atoCat 3483.115 kb on - strand, within atoCat 3483.221 kb on + strand, within atoCat 3483.221 kb on + strand, within atoCat 3483.262 kb on + strand, within atoCat 3483.262 kb on + strand, within atoCat 3483.270 kb on - strand, within atoCat 3483.270 kb on - strand, within atoCat 3483.350 kb on - strand, within atoCat 3483.429 kb on - strand, within atoCat 3483.434 kb on - strand, within atoCat 3483.449 kb on - strand, within atoCat 3483.464 kb on + strand, within atoCat 3483.524 kb on - strand, within atoCat 3483.524 kb on - strand, within atoCat 3483.629 kb on - strand, within atoCat 3483.643 kb on + strand, within atoCat 3483.644 kb on + strand, within atoCat 3483.714 kb on + strand, within atoC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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3,480,284 - lon DVU3303 0.53 +0.0
3,480,318 + lon DVU3303 0.55 +0.1
3,480,358 + lon DVU3303 0.57 +0.1
3,480,367 - lon DVU3303 0.57 -0.7
3,480,374 - lon DVU3303 0.58 +0.2
3,480,430 + lon DVU3303 0.60 +0.7
3,480,430 + lon DVU3303 0.60 +0.1
3,480,486 + lon DVU3303 0.63 +0.3
3,480,486 + lon DVU3303 0.63 -1.8
3,480,491 + lon DVU3303 0.63 -1.4
3,480,514 - lon DVU3303 0.64 +0.2
3,480,541 + lon DVU3303 0.66 +0.3
3,480,549 - lon DVU3303 0.66 +1.5
3,480,559 - lon DVU3303 0.66 +0.3
3,480,584 - lon DVU3303 0.68 -0.2
3,480,619 + lon DVU3303 0.69 +0.2
3,480,624 + lon DVU3303 0.70 +0.3
3,480,637 - lon DVU3303 0.70 +0.1
3,480,649 - lon DVU3303 0.71 +0.1
3,480,739 + lon DVU3303 0.75 +0.1
3,480,747 - lon DVU3303 0.75 -0.1
3,480,749 + lon DVU3303 0.75 -0.1
3,480,761 + lon DVU3303 0.76 +0.1
3,480,805 - lon DVU3303 0.78 +0.5
3,480,828 + lon DVU3303 0.79 +1.5
3,480,828 + lon DVU3303 0.79 -0.4
3,480,836 - lon DVU3303 0.80 -0.2
3,480,836 - lon DVU3303 0.80 +0.9
3,480,836 - lon DVU3303 0.80 +1.4
3,480,859 + lon DVU3303 0.81 +1.0
3,480,889 + lon DVU3303 0.82 +0.0
3,480,927 + lon DVU3303 0.84 -0.8
3,480,943 + lon DVU3303 0.85 +0.4
3,481,005 + lon DVU3303 0.88 -0.3
3,481,118 - +0.2
3,481,129 + +2.5
3,481,158 + -1.2
3,481,166 - +0.6
3,481,203 - +0.3
3,481,225 + +1.2
3,481,243 - +0.2
3,481,296 + +2.7
3,481,320 + +0.5
3,481,363 + -0.6
3,481,363 + +0.4
3,481,371 - +0.1
3,481,371 - +0.5
3,481,401 + +0.1
3,481,409 - +0.1
3,481,466 - DVU3304 0.14 +0.1
3,481,484 + DVU3304 0.15 +0.1
3,481,492 - DVU3304 0.16 +0.2
3,481,497 - DVU3304 0.16 -0.9
3,481,497 - DVU3304 0.16 -1.1
3,481,521 - DVU3304 0.18 +0.1
3,481,568 - DVU3304 0.21 +1.9
3,481,697 + DVU3304 0.29 +0.1
3,481,721 + DVU3304 0.31 +0.1
3,481,753 - DVU3304 0.33 +0.5
3,481,753 - DVU3304 0.33 +0.1
3,481,851 + DVU3304 0.40 -0.2
3,481,859 - DVU3304 0.40 -0.3
3,481,930 + DVU3304 0.45 +0.7
3,481,986 + DVU3304 0.49 +2.5
3,482,019 - DVU3304 0.51 -0.3
3,482,027 - DVU3304 0.52 +0.5
3,482,031 - DVU3304 0.52 +0.2
3,482,063 - DVU3304 0.54 +0.1
3,482,157 + DVU3304 0.61 +0.2
3,482,188 - DVU3304 0.63 +0.3
3,482,201 + DVU3304 0.63 -1.2
3,482,201 + DVU3304 0.63 +0.2
3,482,223 + DVU3304 0.65 -0.1
3,482,400 - DVU3304 0.77 +0.5
3,482,400 - DVU3304 0.77 -0.1
3,482,402 - DVU3304 0.77 +0.4
3,482,424 + DVU3304 0.79 +0.3
3,482,424 + DVU3304 0.79 +1.5
3,482,437 - DVU3304 0.79 +0.3
3,482,496 + DVU3304 0.83 +0.4
3,482,522 + DVU3304 0.85 +0.1
3,482,529 - DVU3304 0.86 +0.2
3,482,608 - +0.4
3,482,609 - +0.2
3,482,686 - +0.2
3,482,833 - +0.3
3,482,838 - +0.2
3,482,872 + +0.1
3,482,872 + -0.1
3,482,889 + atoC DVU3305 0.11 +0.1
3,482,937 + atoC DVU3305 0.15 +0.0
3,482,987 + atoC DVU3305 0.18 -3.0
3,482,999 + atoC DVU3305 0.19 +0.2
3,483,004 + atoC DVU3305 0.20 -0.1
3,483,007 - atoC DVU3305 0.20 +0.2
3,483,026 - atoC DVU3305 0.21 -0.2
3,483,028 + atoC DVU3305 0.21 -0.3
3,483,045 + atoC DVU3305 0.23 -0.8
3,483,083 - atoC DVU3305 0.26 +1.3
3,483,115 - atoC DVU3305 0.28 +0.2
3,483,221 + atoC DVU3305 0.36 +0.5
3,483,221 + atoC DVU3305 0.36 +0.1
3,483,262 + atoC DVU3305 0.39 -0.7
3,483,262 + atoC DVU3305 0.39 +0.0
3,483,270 - atoC DVU3305 0.39 +0.2
3,483,270 - atoC DVU3305 0.39 +0.5
3,483,350 - atoC DVU3305 0.45 +0.4
3,483,429 - atoC DVU3305 0.51 +0.8
3,483,434 - atoC DVU3305 0.51 -0.5
3,483,449 - atoC DVU3305 0.53 -0.2
3,483,464 + atoC DVU3305 0.54 -0.7
3,483,524 - atoC DVU3305 0.58 -0.3
3,483,524 - atoC DVU3305 0.58 -0.2
3,483,629 - atoC DVU3305 0.66 -1.1
3,483,643 + atoC DVU3305 0.67 +0.1
3,483,644 + atoC DVU3305 0.67 +0.1
3,483,714 + atoC DVU3305 0.72 -0.0

Or see this region's nucleotide sequence