Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.979.1 and Xcc-8004.980.1 are separated by 1 nucleotides Xcc-8004.980.1 and Xcc-8004.981.1 overlap by 37 nucleotides Xcc-8004.981.1 and Xcc-8004.982.1 are separated by 63 nucleotides Xcc-8004.982.1 and Xcc-8004.983.1 are separated by 66 nucleotides Xcc-8004.983.1 and Xcc-8004.984.1 are separated by 59 nucleotides
Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707
Xcc-8004.979.1
Xcc-8004.980.1: Xcc-8004.980.1 - hypothetical protein, at 931,709 to 931,951
Xcc-8004.980.1
Xcc-8004.981.1: Xcc-8004.981.1 - FrmR: Negative transcriptional regulator of formaldehyde detoxification operon, at 931,915 to 932,190
Xcc-8004.981.1
Xcc-8004.982.1: Xcc-8004.982.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 932,254 to 933,363
Xcc-8004.982.1
Xcc-8004.983.1: Xcc-8004.983.1 - Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22), at 933,430 to 934,005
Xcc-8004.983.1
Xcc-8004.984.1: Xcc-8004.984.1 - S-formylglutathione hydrolase (EC 3.1.2.12), at 934,065 to 934,895
Xcc-8004.984.1
Position (kb) 932
933
934 Strain fitness (log2 ratio) -2
-1
0
1 at 931.699 kb on - strand at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.753 kb on + strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.754 kb on - strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.818 kb on + strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.819 kb on - strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.880 kb on + strand, within Xcc-8004.980.1 at 931.882 kb on + strand, within Xcc-8004.980.1 at 932.007 kb on - strand, within Xcc-8004.981.1 at 932.081 kb on + strand, within Xcc-8004.981.1 at 932.082 kb on - strand, within Xcc-8004.981.1 at 932.095 kb on - strand, within Xcc-8004.981.1 at 932.180 kb on - strand at 932.180 kb on - strand at 932.180 kb on - strand at 932.415 kb on + strand, within Xcc-8004.982.1 at 932.416 kb on - strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.515 kb on + strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.516 kb on - strand, within Xcc-8004.982.1 at 932.633 kb on - strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.656 kb on + strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.657 kb on - strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.683 kb on + strand, within Xcc-8004.982.1 at 932.684 kb on - strand, within Xcc-8004.982.1 at 933.214 kb on - strand, within Xcc-8004.982.1 at 933.435 kb on + strand at 933.436 kb on - strand at 933.458 kb on + strand at 933.626 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.742 kb on + strand, within Xcc-8004.983.1 at 933.932 kb on - strand, within Xcc-8004.983.1 at 934.162 kb on - strand, within Xcc-8004.984.1 at 934.162 kb on - strand, within Xcc-8004.984.1 at 934.203 kb on + strand, within Xcc-8004.984.1 at 934.204 kb on - strand, within Xcc-8004.984.1 at 934.267 kb on - strand, within Xcc-8004.984.1 at 934.344 kb on + strand, within Xcc-8004.984.1 at 934.345 kb on - strand, within Xcc-8004.984.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 931,699 - -0.8 931,753 + Xcc-8004.980.1 0.18 -0.5 931,753 + Xcc-8004.980.1 0.18 +0.5 931,753 + Xcc-8004.980.1 0.18 +0.4 931,753 + Xcc-8004.980.1 0.18 +0.4 931,753 + Xcc-8004.980.1 0.18 -1.0 931,753 + Xcc-8004.980.1 0.18 +0.3 931,753 + Xcc-8004.980.1 0.18 -0.4 931,753 + Xcc-8004.980.1 0.18 -0.4 931,754 - Xcc-8004.980.1 0.19 +0.5 931,754 - Xcc-8004.980.1 0.19 -1.1 931,754 - Xcc-8004.980.1 0.19 +1.1 931,754 - Xcc-8004.980.1 0.19 +0.8 931,754 - Xcc-8004.980.1 0.19 -0.4 931,818 + Xcc-8004.980.1 0.45 +0.9 931,818 + Xcc-8004.980.1 0.45 +1.2 931,819 - Xcc-8004.980.1 0.45 +1.0 931,819 - Xcc-8004.980.1 0.45 +1.0 931,880 + Xcc-8004.980.1 0.70 -0.6 931,880 + Xcc-8004.980.1 0.70 +0.5 931,882 + Xcc-8004.980.1 0.71 +1.2 932,007 - Xcc-8004.981.1 0.33 -0.7 932,081 + Xcc-8004.981.1 0.60 +0.4 932,082 - Xcc-8004.981.1 0.61 -1.3 932,095 - Xcc-8004.981.1 0.65 +1.2 932,180 - +1.1 932,180 - -1.0 932,180 - -0.4 932,415 + Xcc-8004.982.1 0.15 -2.2 932,416 - Xcc-8004.982.1 0.15 +0.7 932,515 + Xcc-8004.982.1 0.24 -0.7 932,515 + Xcc-8004.982.1 0.24 +1.4 932,515 + Xcc-8004.982.1 0.24 +1.1 932,515 + Xcc-8004.982.1 0.24 -1.9 932,516 - Xcc-8004.982.1 0.24 +1.2 932,516 - Xcc-8004.982.1 0.24 -0.3 932,516 - Xcc-8004.982.1 0.24 -0.7 932,633 - Xcc-8004.982.1 0.34 -0.8 932,656 + Xcc-8004.982.1 0.36 -0.6 932,656 + Xcc-8004.982.1 0.36 -0.5 932,656 + Xcc-8004.982.1 0.36 +0.3 932,656 + Xcc-8004.982.1 0.36 +1.1 932,656 + Xcc-8004.982.1 0.36 +0.3 932,656 + Xcc-8004.982.1 0.36 +1.7 932,656 + Xcc-8004.982.1 0.36 +0.7 932,656 + Xcc-8004.982.1 0.36 +0.9 932,657 - Xcc-8004.982.1 0.36 -0.7 932,657 - Xcc-8004.982.1 0.36 -0.7 932,683 + Xcc-8004.982.1 0.39 +0.5 932,683 + Xcc-8004.982.1 0.39 +0.4 932,684 - Xcc-8004.982.1 0.39 +0.6 933,214 - Xcc-8004.982.1 0.86 +0.3 933,435 + -1.5 933,436 - +0.6 933,458 + +0.1 933,626 + Xcc-8004.983.1 0.34 -0.4 933,742 + Xcc-8004.983.1 0.54 -1.6 933,742 + Xcc-8004.983.1 0.54 -0.0 933,742 + Xcc-8004.983.1 0.54 +0.9 933,932 - Xcc-8004.983.1 0.87 -0.6 934,162 - Xcc-8004.984.1 0.12 +1.6 934,162 - Xcc-8004.984.1 0.12 +0.6 934,203 + Xcc-8004.984.1 0.17 -0.1 934,204 - Xcc-8004.984.1 0.17 +1.4 934,267 - Xcc-8004.984.1 0.24 -0.7 934,344 + Xcc-8004.984.1 0.34 -0.2 934,345 - Xcc-8004.984.1 0.34 -1.5
Or see this region's nucleotide sequence