Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.976.1 and Xcc-8004.977.1 are separated by 173 nucleotides Xcc-8004.977.1 and Xcc-8004.978.1 are separated by 64 nucleotides Xcc-8004.978.1 and Xcc-8004.979.1 are separated by 95 nucleotides
Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771
Xcc-8004.976.1
Xcc-8004.977.1: Xcc-8004.977.1 - hypothetical protein, at 928,945 to 929,451
Xcc-8004.977.1
Xcc-8004.978.1: Xcc-8004.978.1 - C4-dicarboxylate transporter/malic acid transport protein, at 929,516 to 930,697
Xcc-8004.978.1
Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707
Xcc-8004.979.1
Position (kb) 929
930
931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 928.556 kb on + strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.659 kb on - strand, within Xcc-8004.976.1 at 928.659 kb on - strand, within Xcc-8004.976.1 at 928.790 kb on + strand at 928.790 kb on + strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.928 kb on + strand at 928.929 kb on - strand at 928.929 kb on - strand at 929.101 kb on - strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.177 kb on + strand, within Xcc-8004.977.1 at 929.178 kb on - strand, within Xcc-8004.977.1 at 929.512 kb on + strand at 929.512 kb on + strand at 929.512 kb on + strand at 929.513 kb on - strand at 929.627 kb on + strand at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.655 kb on - strand, within Xcc-8004.978.1 at 929.773 kb on - strand, within Xcc-8004.978.1 at 929.921 kb on + strand, within Xcc-8004.978.1 at 929.921 kb on + strand, within Xcc-8004.978.1 at 929.922 kb on - strand, within Xcc-8004.978.1 at 930.060 kb on + strand, within Xcc-8004.978.1 at 930.177 kb on - strand, within Xcc-8004.978.1 at 930.183 kb on - strand, within Xcc-8004.978.1 at 930.183 kb on - strand, within Xcc-8004.978.1 at 930.220 kb on + strand, within Xcc-8004.978.1 at 930.232 kb on - strand, within Xcc-8004.978.1 at 930.330 kb on + strand, within Xcc-8004.978.1 at 930.331 kb on - strand, within Xcc-8004.978.1 at 930.331 kb on - strand, within Xcc-8004.978.1 at 930.373 kb on + strand, within Xcc-8004.978.1 at 930.373 kb on + strand, within Xcc-8004.978.1 at 930.453 kb on + strand, within Xcc-8004.978.1 at 930.453 kb on + strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.728 kb on + strand at 930.728 kb on + strand at 930.729 kb on - strand at 930.729 kb on - strand at 930.760 kb on + strand at 930.772 kb on + strand at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.140 kb on + strand, within Xcc-8004.979.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 928,556 + Xcc-8004.976.1 0.80 +0.4 928,557 - Xcc-8004.976.1 0.80 -0.8 928,557 - Xcc-8004.976.1 0.80 -0.3 928,557 - Xcc-8004.976.1 0.80 +0.4 928,557 - Xcc-8004.976.1 0.80 +1.0 928,562 + Xcc-8004.976.1 0.81 +0.3 928,562 + Xcc-8004.976.1 0.81 -0.7 928,562 + Xcc-8004.976.1 0.81 +0.7 928,563 - Xcc-8004.976.1 0.81 +0.9 928,563 - Xcc-8004.976.1 0.81 -0.9 928,563 - Xcc-8004.976.1 0.81 +0.3 928,563 - Xcc-8004.976.1 0.81 +1.0 928,563 - Xcc-8004.976.1 0.81 +0.6 928,563 - Xcc-8004.976.1 0.81 +0.5 928,658 + Xcc-8004.976.1 0.90 +1.1 928,658 + Xcc-8004.976.1 0.90 -0.2 928,658 + Xcc-8004.976.1 0.90 +1.0 928,658 + Xcc-8004.976.1 0.90 -2.4 928,659 - Xcc-8004.976.1 0.90 -1.2 928,659 - Xcc-8004.976.1 0.90 +0.7 928,790 + -2.5 928,790 + +1.3 928,814 - +0.2 928,814 - +0.1 928,814 - -1.4 928,928 + -0.7 928,929 - -0.5 928,929 - -0.6 929,101 - Xcc-8004.977.1 0.31 -0.3 929,166 + Xcc-8004.977.1 0.44 +0.4 929,166 + Xcc-8004.977.1 0.44 +0.7 929,166 + Xcc-8004.977.1 0.44 -0.2 929,167 - Xcc-8004.977.1 0.44 -0.2 929,167 - Xcc-8004.977.1 0.44 +1.5 929,167 - Xcc-8004.977.1 0.44 +0.9 929,177 + Xcc-8004.977.1 0.46 +1.1 929,178 - Xcc-8004.977.1 0.46 -0.1 929,512 + +0.3 929,512 + -2.0 929,512 + +1.0 929,513 - +0.2 929,627 + -0.4 929,643 - Xcc-8004.978.1 0.11 -0.4 929,643 - Xcc-8004.978.1 0.11 +0.7 929,643 - Xcc-8004.978.1 0.11 +1.3 929,655 - Xcc-8004.978.1 0.12 -0.7 929,773 - Xcc-8004.978.1 0.22 -0.0 929,921 + Xcc-8004.978.1 0.34 +0.1 929,921 + Xcc-8004.978.1 0.34 -0.2 929,922 - Xcc-8004.978.1 0.34 -0.0 930,060 + Xcc-8004.978.1 0.46 -1.2 930,177 - Xcc-8004.978.1 0.56 -0.1 930,183 - Xcc-8004.978.1 0.56 +0.5 930,183 - Xcc-8004.978.1 0.56 +0.6 930,220 + Xcc-8004.978.1 0.60 -0.3 930,232 - Xcc-8004.978.1 0.61 +0.2 930,330 + Xcc-8004.978.1 0.69 -0.1 930,331 - Xcc-8004.978.1 0.69 -0.3 930,331 - Xcc-8004.978.1 0.69 -0.6 930,373 + Xcc-8004.978.1 0.73 +0.6 930,373 + Xcc-8004.978.1 0.73 +0.2 930,453 + Xcc-8004.978.1 0.79 +1.9 930,453 + Xcc-8004.978.1 0.79 -0.1 930,454 - Xcc-8004.978.1 0.79 +1.4 930,454 - Xcc-8004.978.1 0.79 -0.1 930,454 - Xcc-8004.978.1 0.79 +1.0 930,454 - Xcc-8004.978.1 0.79 -1.5 930,728 + +2.1 930,728 + -0.1 930,729 - -0.8 930,729 - +0.8 930,760 + -0.4 930,772 + -1.3 930,926 + Xcc-8004.979.1 0.15 +0.5 930,926 + Xcc-8004.979.1 0.15 +0.9 930,927 - Xcc-8004.979.1 0.15 +0.6 930,927 - Xcc-8004.979.1 0.15 -1.1 931,108 + Xcc-8004.979.1 0.34 -1.6 931,108 + Xcc-8004.979.1 0.34 +0.5 931,109 - Xcc-8004.979.1 0.35 +1.1 931,109 - Xcc-8004.979.1 0.35 +0.7 931,140 + Xcc-8004.979.1 0.38 -0.9
Or see this region's nucleotide sequence