Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.976.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.973.1 and Xcc-8004.974.1 overlap by 4 nucleotidesXcc-8004.974.1 and Xcc-8004.976.1 are separated by 12 nucleotidesXcc-8004.976.1 and Xcc-8004.977.1 are separated by 173 nucleotidesXcc-8004.977.1 and Xcc-8004.978.1 are separated by 64 nucleotides Xcc-8004.973.1: Xcc-8004.973.1 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 925,326 to 926,822 Xcc-8004.973.1 Xcc-8004.974.1: Xcc-8004.974.1 - two-component system regulatory protein, at 926,819 to 927,661 Xcc-8004.974.1 Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771 Xcc-8004.976.1 Xcc-8004.977.1: Xcc-8004.977.1 - hypothetical protein, at 928,945 to 929,451 Xcc-8004.977.1 Xcc-8004.978.1: Xcc-8004.978.1 - C4-dicarboxylate transporter/malic acid transport protein, at 929,516 to 930,697 Xcc-8004.978.1 Position (kb) 927 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1at 926.701 kb on + strandat 926.701 kb on + strandat 926.701 kb on + strandat 926.701 kb on + strandat 926.702 kb on - strandat 926.850 kb on + strandat 926.850 kb on + strandat 926.850 kb on + strandat 926.850 kb on + strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.851 kb on - strandat 926.946 kb on + strand, within Xcc-8004.974.1at 926.946 kb on + strand, within Xcc-8004.974.1at 926.947 kb on - strand, within Xcc-8004.974.1at 926.974 kb on - strand, within Xcc-8004.974.1at 927.068 kb on - strand, within Xcc-8004.974.1at 927.127 kb on - strand, within Xcc-8004.974.1at 927.127 kb on - strand, within Xcc-8004.974.1at 927.232 kb on - strand, within Xcc-8004.974.1at 927.271 kb on + strand, within Xcc-8004.974.1at 927.271 kb on + strand, within Xcc-8004.974.1at 927.271 kb on + strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.272 kb on - strand, within Xcc-8004.974.1at 927.377 kb on + strand, within Xcc-8004.974.1at 927.377 kb on + strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.378 kb on - strand, within Xcc-8004.974.1at 927.450 kb on + strand, within Xcc-8004.974.1at 927.451 kb on - strand, within Xcc-8004.974.1at 927.451 kb on - strand, within Xcc-8004.974.1at 927.631 kb on + strandat 927.631 kb on + strandat 927.632 kb on - strandat 927.968 kb on + strand, within Xcc-8004.976.1at 927.969 kb on - strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.127 kb on + strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.128 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.205 kb on - strand, within Xcc-8004.976.1at 928.390 kb on + strand, within Xcc-8004.976.1at 928.424 kb on + strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.425 kb on - strand, within Xcc-8004.976.1at 928.556 kb on + strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.557 kb on - strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.562 kb on + strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.563 kb on - strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.658 kb on + strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1at 928.659 kb on - strand, within Xcc-8004.976.1at 928.790 kb on + strandat 928.790 kb on + strandat 928.814 kb on - strandat 928.814 kb on - strandat 928.814 kb on - strandat 928.928 kb on + strandat 928.929 kb on - strandat 928.929 kb on - strandat 929.101 kb on - strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.166 kb on + strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.167 kb on - strand, within Xcc-8004.977.1at 929.177 kb on + strand, within Xcc-8004.977.1at 929.178 kb on - strand, within Xcc-8004.977.1at 929.512 kb on + strandat 929.512 kb on + strandat 929.512 kb on + strandat 929.513 kb on - strandat 929.627 kb on + strandat 929.643 kb on - strand, within Xcc-8004.978.1at 929.643 kb on - strand, within Xcc-8004.978.1at 929.643 kb on - strand, within Xcc-8004.978.1at 929.655 kb on - strand, within Xcc-8004.978.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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926,701 + -1.2
926,701 + -0.3
926,701 + +0.6
926,701 + +0.1
926,702 - -0.3
926,850 + +1.1
926,850 + -0.4
926,850 + -2.0
926,850 + -1.2
926,851 - -0.6
926,851 - -0.3
926,851 - -1.1
926,851 - +0.3
926,851 - +0.2
926,851 - +0.7
926,851 - -1.3
926,946 + Xcc-8004.974.1 0.15 +1.0
926,946 + Xcc-8004.974.1 0.15 +1.1
926,947 - Xcc-8004.974.1 0.15 -0.5
926,974 - Xcc-8004.974.1 0.18 +0.9
927,068 - Xcc-8004.974.1 0.30 +0.1
927,127 - Xcc-8004.974.1 0.37 -0.2
927,127 - Xcc-8004.974.1 0.37 -0.9
927,232 - Xcc-8004.974.1 0.49 -1.3
927,271 + Xcc-8004.974.1 0.54 -1.3
927,271 + Xcc-8004.974.1 0.54 +0.8
927,271 + Xcc-8004.974.1 0.54 -0.8
927,272 - Xcc-8004.974.1 0.54 -2.1
927,272 - Xcc-8004.974.1 0.54 -0.6
927,272 - Xcc-8004.974.1 0.54 +1.2
927,272 - Xcc-8004.974.1 0.54 -1.6
927,272 - Xcc-8004.974.1 0.54 +0.7
927,272 - Xcc-8004.974.1 0.54 +1.0
927,377 + Xcc-8004.974.1 0.66 +0.5
927,377 + Xcc-8004.974.1 0.66 +0.8
927,378 - Xcc-8004.974.1 0.66 -0.6
927,378 - Xcc-8004.974.1 0.66 -3.2
927,378 - Xcc-8004.974.1 0.66 -1.2
927,378 - Xcc-8004.974.1 0.66 -0.1
927,450 + Xcc-8004.974.1 0.75 +0.5
927,451 - Xcc-8004.974.1 0.75 -1.0
927,451 - Xcc-8004.974.1 0.75 +0.6
927,631 + -1.9
927,631 + +1.1
927,632 - +1.7
927,968 + Xcc-8004.976.1 0.27 +0.9
927,969 - Xcc-8004.976.1 0.27 -1.6
928,127 + Xcc-8004.976.1 0.41 -0.6
928,127 + Xcc-8004.976.1 0.41 -0.1
928,127 + Xcc-8004.976.1 0.41 +0.8
928,127 + Xcc-8004.976.1 0.41 +0.2
928,128 - Xcc-8004.976.1 0.41 -0.7
928,128 - Xcc-8004.976.1 0.41 -0.1
928,128 - Xcc-8004.976.1 0.41 -1.2
928,205 - Xcc-8004.976.1 0.48 +0.5
928,205 - Xcc-8004.976.1 0.48 +1.7
928,205 - Xcc-8004.976.1 0.48 +0.1
928,390 + Xcc-8004.976.1 0.65 +1.3
928,424 + Xcc-8004.976.1 0.68 +0.1
928,425 - Xcc-8004.976.1 0.68 +0.9
928,425 - Xcc-8004.976.1 0.68 -0.7
928,425 - Xcc-8004.976.1 0.68 -1.4
928,556 + Xcc-8004.976.1 0.80 +0.4
928,557 - Xcc-8004.976.1 0.80 -0.8
928,557 - Xcc-8004.976.1 0.80 -0.3
928,557 - Xcc-8004.976.1 0.80 +0.4
928,557 - Xcc-8004.976.1 0.80 +1.0
928,562 + Xcc-8004.976.1 0.81 +0.3
928,562 + Xcc-8004.976.1 0.81 -0.7
928,562 + Xcc-8004.976.1 0.81 +0.7
928,563 - Xcc-8004.976.1 0.81 +0.9
928,563 - Xcc-8004.976.1 0.81 -0.9
928,563 - Xcc-8004.976.1 0.81 +0.3
928,563 - Xcc-8004.976.1 0.81 +1.0
928,563 - Xcc-8004.976.1 0.81 +0.6
928,563 - Xcc-8004.976.1 0.81 +0.5
928,658 + Xcc-8004.976.1 0.90 +1.1
928,658 + Xcc-8004.976.1 0.90 -0.2
928,658 + Xcc-8004.976.1 0.90 +1.0
928,658 + Xcc-8004.976.1 0.90 -2.4
928,659 - Xcc-8004.976.1 0.90 -1.2
928,659 - Xcc-8004.976.1 0.90 +0.7
928,790 + -2.5
928,790 + +1.3
928,814 - +0.2
928,814 - +0.1
928,814 - -1.4
928,928 + -0.7
928,929 - -0.5
928,929 - -0.6
929,101 - Xcc-8004.977.1 0.31 -0.3
929,166 + Xcc-8004.977.1 0.44 +0.4
929,166 + Xcc-8004.977.1 0.44 +0.7
929,166 + Xcc-8004.977.1 0.44 -0.2
929,167 - Xcc-8004.977.1 0.44 -0.2
929,167 - Xcc-8004.977.1 0.44 +1.5
929,167 - Xcc-8004.977.1 0.44 +0.9
929,177 + Xcc-8004.977.1 0.46 +1.1
929,178 - Xcc-8004.977.1 0.46 -0.1
929,512 + +0.3
929,512 + -2.0
929,512 + +1.0
929,513 - +0.2
929,627 + -0.4
929,643 - Xcc-8004.978.1 0.11 -0.4
929,643 - Xcc-8004.978.1 0.11 +0.7
929,643 - Xcc-8004.978.1 0.11 +1.3
929,655 - Xcc-8004.978.1 0.12 -0.7

Or see this region's nucleotide sequence