Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.969.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.967.1 and Xcc-8004.968.1 are separated by 19 nucleotidesXcc-8004.968.1 and Xcc-8004.969.1 are separated by 93 nucleotidesXcc-8004.969.1 and Xcc-8004.970.1 are separated by 104 nucleotides Xcc-8004.967.1: Xcc-8004.967.1 - Endonuclease/exonuclease/phosphatase family protein, at 919,402 to 920,169 Xcc-8004.967.1 Xcc-8004.968.1: Xcc-8004.968.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 920,189 to 921,010 Xcc-8004.968.1 Xcc-8004.969.1: Xcc-8004.969.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 921,104 to 921,754 Xcc-8004.969.1 Xcc-8004.970.1: Xcc-8004.970.1 - Probable cytochrome c2, at 921,859 to 922,656 Xcc-8004.970.1 Position (kb) 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 920.175 kb on - strandat 920.175 kb on - strandat 920.175 kb on - strandat 920.175 kb on - strandat 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.275 kb on - strand, within Xcc-8004.968.1at 920.275 kb on - strand, within Xcc-8004.968.1at 920.275 kb on - strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.415 kb on + strand, within Xcc-8004.968.1at 920.415 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.491 kb on - strand, within Xcc-8004.968.1at 920.491 kb on - strand, within Xcc-8004.968.1at 920.538 kb on + strand, within Xcc-8004.968.1at 920.538 kb on + strand, within Xcc-8004.968.1at 920.539 kb on - strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.589 kb on + strand, within Xcc-8004.968.1at 920.590 kb on - strand, within Xcc-8004.968.1at 920.590 kb on - strand, within Xcc-8004.968.1at 920.670 kb on + strand, within Xcc-8004.968.1at 920.671 kb on - strand, within Xcc-8004.968.1at 920.671 kb on - strand, within Xcc-8004.968.1at 920.671 kb on - strand, within Xcc-8004.968.1at 920.715 kb on + strand, within Xcc-8004.968.1at 921.096 kb on + strandat 921.144 kb on + strandat 921.145 kb on - strandat 921.171 kb on + strand, within Xcc-8004.969.1at 921.171 kb on + strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.192 kb on + strand, within Xcc-8004.969.1at 921.192 kb on + strand, within Xcc-8004.969.1at 921.325 kb on - strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.453 kb on + strand, within Xcc-8004.969.1at 921.453 kb on + strand, within Xcc-8004.969.1at 921.454 kb on - strand, within Xcc-8004.969.1at 921.454 kb on - strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.627 kb on + strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.785 kb on + strandat 921.785 kb on + strandat 921.785 kb on + strandat 921.935 kb on + strandat 921.935 kb on + strandat 921.993 kb on + strand, within Xcc-8004.970.1at 921.994 kb on - strand, within Xcc-8004.970.1at 922.038 kb on - strand, within Xcc-8004.970.1at 922.038 kb on - strand, within Xcc-8004.970.1at 922.061 kb on + strand, within Xcc-8004.970.1at 922.197 kb on - strand, within Xcc-8004.970.1at 922.277 kb on + strand, within Xcc-8004.970.1at 922.350 kb on + strand, within Xcc-8004.970.1at 922.395 kb on - strand, within Xcc-8004.970.1at 922.424 kb on + strand, within Xcc-8004.970.1at 922.424 kb on + strand, within Xcc-8004.970.1at 922.425 kb on - strand, within Xcc-8004.970.1at 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.662 kb on - strandat 922.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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920,175 - +0.1
920,175 - +1.1
920,175 - +0.0
920,175 - -1.2
920,274 + Xcc-8004.968.1 0.10 -0.7
920,274 + Xcc-8004.968.1 0.10 -0.6
920,274 + Xcc-8004.968.1 0.10 -0.7
920,274 + Xcc-8004.968.1 0.10 -2.7
920,274 + Xcc-8004.968.1 0.10 -0.8
920,274 + Xcc-8004.968.1 0.10 +2.7
920,274 + Xcc-8004.968.1 0.10 -1.3
920,274 + Xcc-8004.968.1 0.10 +0.8
920,275 - Xcc-8004.968.1 0.10 -1.7
920,275 - Xcc-8004.968.1 0.10 -0.4
920,275 - Xcc-8004.968.1 0.10 -0.5
920,406 + Xcc-8004.968.1 0.26 +0.0
920,406 + Xcc-8004.968.1 0.26 -2.4
920,406 + Xcc-8004.968.1 0.26 -0.7
920,406 + Xcc-8004.968.1 0.26 -0.9
920,407 - Xcc-8004.968.1 0.27 -0.5
920,407 - Xcc-8004.968.1 0.27 -1.8
920,407 - Xcc-8004.968.1 0.27 -0.4
920,407 - Xcc-8004.968.1 0.27 +0.6
920,415 + Xcc-8004.968.1 0.27 -1.4
920,415 + Xcc-8004.968.1 0.27 -0.1
920,490 + Xcc-8004.968.1 0.37 -0.0
920,490 + Xcc-8004.968.1 0.37 -1.1
920,490 + Xcc-8004.968.1 0.37 +0.5
920,490 + Xcc-8004.968.1 0.37 -2.7
920,491 - Xcc-8004.968.1 0.37 -0.3
920,491 - Xcc-8004.968.1 0.37 +0.2
920,538 + Xcc-8004.968.1 0.42 -0.3
920,538 + Xcc-8004.968.1 0.42 -0.1
920,539 - Xcc-8004.968.1 0.43 -3.5
920,553 + Xcc-8004.968.1 0.44 -0.7
920,553 + Xcc-8004.968.1 0.44 -1.9
920,553 + Xcc-8004.968.1 0.44 -1.5
920,553 + Xcc-8004.968.1 0.44 -0.9
920,554 - Xcc-8004.968.1 0.44 +1.1
920,554 - Xcc-8004.968.1 0.44 +0.4
920,554 - Xcc-8004.968.1 0.44 +0.1
920,554 - Xcc-8004.968.1 0.44 -1.4
920,554 - Xcc-8004.968.1 0.44 -0.8
920,554 - Xcc-8004.968.1 0.44 +0.6
920,589 + Xcc-8004.968.1 0.49 +1.1
920,590 - Xcc-8004.968.1 0.49 +1.1
920,590 - Xcc-8004.968.1 0.49 -1.0
920,670 + Xcc-8004.968.1 0.59 +2.7
920,671 - Xcc-8004.968.1 0.59 +0.1
920,671 - Xcc-8004.968.1 0.59 -0.6
920,671 - Xcc-8004.968.1 0.59 -0.9
920,715 + Xcc-8004.968.1 0.64 -0.7
921,096 + +0.7
921,144 + -0.3
921,145 - -0.5
921,171 + Xcc-8004.969.1 0.10 -0.2
921,171 + Xcc-8004.969.1 0.10 -2.6
921,172 - Xcc-8004.969.1 0.10 -0.3
921,172 - Xcc-8004.969.1 0.10 -2.1
921,172 - Xcc-8004.969.1 0.10 +0.5
921,192 + Xcc-8004.969.1 0.14 -0.8
921,192 + Xcc-8004.969.1 0.14 +1.9
921,325 - Xcc-8004.969.1 0.34 -0.1
921,333 + Xcc-8004.969.1 0.35 -0.6
921,333 + Xcc-8004.969.1 0.35 +0.4
921,333 + Xcc-8004.969.1 0.35 -0.6
921,333 + Xcc-8004.969.1 0.35 +0.5
921,333 + Xcc-8004.969.1 0.35 -1.0
921,333 + Xcc-8004.969.1 0.35 +1.1
921,333 + Xcc-8004.969.1 0.35 +0.3
921,334 - Xcc-8004.969.1 0.35 -0.0
921,334 - Xcc-8004.969.1 0.35 -1.6
921,334 - Xcc-8004.969.1 0.35 +1.1
921,453 + Xcc-8004.969.1 0.54 -0.6
921,453 + Xcc-8004.969.1 0.54 +0.6
921,454 - Xcc-8004.969.1 0.54 +1.3
921,454 - Xcc-8004.969.1 0.54 +1.4
921,516 + Xcc-8004.969.1 0.63 +0.4
921,516 + Xcc-8004.969.1 0.63 +0.0
921,516 + Xcc-8004.969.1 0.63 +1.3
921,516 + Xcc-8004.969.1 0.63 +0.9
921,516 + Xcc-8004.969.1 0.63 +0.9
921,516 + Xcc-8004.969.1 0.63 -0.4
921,517 - Xcc-8004.969.1 0.63 +1.0
921,517 - Xcc-8004.969.1 0.63 -0.1
921,517 - Xcc-8004.969.1 0.63 +0.1
921,517 - Xcc-8004.969.1 0.63 +0.2
921,517 - Xcc-8004.969.1 0.63 +1.0
921,517 - Xcc-8004.969.1 0.63 +1.0
921,517 - Xcc-8004.969.1 0.63 +0.6
921,517 - Xcc-8004.969.1 0.63 +1.2
921,517 - Xcc-8004.969.1 0.63 -1.9
921,627 + Xcc-8004.969.1 0.80 +1.3
921,628 - Xcc-8004.969.1 0.80 +0.6
921,628 - Xcc-8004.969.1 0.80 -1.5
921,628 - Xcc-8004.969.1 0.80 -0.4
921,654 + Xcc-8004.969.1 0.84 +1.8
921,654 + Xcc-8004.969.1 0.84 +0.5
921,654 + Xcc-8004.969.1 0.84 -0.1
921,654 + Xcc-8004.969.1 0.84 +1.5
921,654 + Xcc-8004.969.1 0.84 -0.3
921,654 + Xcc-8004.969.1 0.84 -0.1
921,654 + Xcc-8004.969.1 0.84 -1.8
921,654 + Xcc-8004.969.1 0.84 +0.5
921,654 + Xcc-8004.969.1 0.84 +0.5
921,654 + Xcc-8004.969.1 0.84 -1.1
921,654 + Xcc-8004.969.1 0.84 -0.2
921,655 - Xcc-8004.969.1 0.85 -1.1
921,655 - Xcc-8004.969.1 0.85 -1.2
921,655 - Xcc-8004.969.1 0.85 +0.6
921,655 - Xcc-8004.969.1 0.85 -1.4
921,655 - Xcc-8004.969.1 0.85 +0.3
921,655 - Xcc-8004.969.1 0.85 +0.5
921,655 - Xcc-8004.969.1 0.85 -0.5
921,655 - Xcc-8004.969.1 0.85 +0.8
921,655 - Xcc-8004.969.1 0.85 +1.1
921,655 - Xcc-8004.969.1 0.85 +0.2
921,785 + -0.2
921,785 + +1.1
921,785 + -0.3
921,935 + -1.5
921,935 + -0.1
921,993 + Xcc-8004.970.1 0.17 -1.7
921,994 - Xcc-8004.970.1 0.17 +0.4
922,038 - Xcc-8004.970.1 0.22 -0.6
922,038 - Xcc-8004.970.1 0.22 +1.8
922,061 + Xcc-8004.970.1 0.25 +1.0
922,197 - Xcc-8004.970.1 0.42 -0.7
922,277 + Xcc-8004.970.1 0.52 -0.6
922,350 + Xcc-8004.970.1 0.62 -1.1
922,395 - Xcc-8004.970.1 0.67 +0.0
922,424 + Xcc-8004.970.1 0.71 +1.9
922,424 + Xcc-8004.970.1 0.71 +0.4
922,425 - Xcc-8004.970.1 0.71 +0.5
922,662 - -0.3
922,662 - +0.5
922,662 - +1.1
922,662 - -0.4
922,662 - -1.8
922,662 - +0.8
922,662 - +0.3
922,672 - -1.7

Or see this region's nucleotide sequence