Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.918.1 and Xcc-8004.919.1 are separated by 59 nucleotides Xcc-8004.919.1 and Xcc-8004.921.1 overlap by 23 nucleotides
Xcc-8004.918.1: Xcc-8004.918.1 - Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13), at 862,275 to 863,330
Xcc-8004.918.1
Xcc-8004.919.1: Xcc-8004.919.1 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 863,390 to 864,796
Xcc-8004.919.1
Xcc-8004.921.1: Xcc-8004.921.1 - FIG01210236: hypothetical protein, at 864,774 to 865,919
Xcc-8004.921.1
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 862.518 kb on + strand, within Xcc-8004.918.1 at 862.518 kb on + strand, within Xcc-8004.918.1 at 862.519 kb on - strand, within Xcc-8004.918.1 at 862.519 kb on - strand, within Xcc-8004.918.1 at 862.519 kb on - strand, within Xcc-8004.918.1 at 862.639 kb on - strand, within Xcc-8004.918.1 at 862.639 kb on - strand, within Xcc-8004.918.1 at 862.639 kb on - strand, within Xcc-8004.918.1 at 862.639 kb on - strand, within Xcc-8004.918.1 at 862.641 kb on + strand, within Xcc-8004.918.1 at 862.719 kb on + strand, within Xcc-8004.918.1 at 862.720 kb on - strand, within Xcc-8004.918.1 at 862.794 kb on + strand, within Xcc-8004.918.1 at 862.794 kb on + strand, within Xcc-8004.918.1 at 862.794 kb on + strand, within Xcc-8004.918.1 at 862.795 kb on - strand, within Xcc-8004.918.1 at 862.833 kb on + strand, within Xcc-8004.918.1 at 862.833 kb on + strand, within Xcc-8004.918.1 at 862.834 kb on - strand, within Xcc-8004.918.1 at 862.834 kb on - strand, within Xcc-8004.918.1 at 862.872 kb on + strand, within Xcc-8004.918.1 at 862.899 kb on + strand, within Xcc-8004.918.1 at 863.284 kb on - strand at 863.396 kb on + strand at 863.396 kb on + strand at 863.396 kb on + strand at 863.429 kb on + strand at 863.429 kb on + strand at 863.430 kb on - strand at 863.430 kb on - strand at 863.430 kb on - strand at 863.507 kb on + strand at 863.507 kb on + strand at 863.778 kb on - strand, within Xcc-8004.919.1 at 863.999 kb on - strand, within Xcc-8004.919.1 at 864.032 kb on + strand, within Xcc-8004.919.1 at 864.033 kb on - strand, within Xcc-8004.919.1 at 864.033 kb on - strand, within Xcc-8004.919.1 at 864.119 kb on + strand, within Xcc-8004.919.1 at 864.119 kb on + strand, within Xcc-8004.919.1 at 864.120 kb on - strand, within Xcc-8004.919.1 at 864.182 kb on + strand, within Xcc-8004.919.1 at 864.182 kb on + strand, within Xcc-8004.919.1 at 864.182 kb on + strand, within Xcc-8004.919.1 at 864.183 kb on - strand, within Xcc-8004.919.1 at 864.183 kb on - strand, within Xcc-8004.919.1 at 864.183 kb on - strand, within Xcc-8004.919.1 at 864.183 kb on - strand, within Xcc-8004.919.1 at 864.183 kb on - strand, within Xcc-8004.919.1 at 864.356 kb on + strand, within Xcc-8004.919.1 at 864.356 kb on + strand, within Xcc-8004.919.1 at 864.357 kb on - strand, within Xcc-8004.919.1 at 864.357 kb on - strand, within Xcc-8004.919.1 at 864.450 kb on - strand, within Xcc-8004.919.1 at 864.572 kb on + strand, within Xcc-8004.919.1 at 864.572 kb on + strand, within Xcc-8004.919.1 at 864.572 kb on + strand, within Xcc-8004.919.1 at 864.572 kb on + strand, within Xcc-8004.919.1 at 864.573 kb on - strand, within Xcc-8004.919.1 at 864.573 kb on - strand, within Xcc-8004.919.1 at 864.666 kb on + strand at 864.667 kb on - strand at 864.800 kb on - strand at 864.800 kb on - strand at 864.800 kb on - strand at 864.800 kb on - strand at 864.999 kb on + strand, within Xcc-8004.921.1 at 865.104 kb on + strand, within Xcc-8004.921.1 at 865.105 kb on - strand, within Xcc-8004.921.1 at 865.266 kb on + strand, within Xcc-8004.921.1 at 865.267 kb on - strand, within Xcc-8004.921.1 at 865.267 kb on - strand, within Xcc-8004.921.1 at 865.267 kb on - strand, within Xcc-8004.921.1 at 865.534 kb on - strand, within Xcc-8004.921.1 at 865.619 kb on + strand, within Xcc-8004.921.1 at 865.629 kb on + strand, within Xcc-8004.921.1 at 865.629 kb on + strand, within Xcc-8004.921.1 at 865.630 kb on - strand, within Xcc-8004.921.1 at 865.630 kb on - strand, within Xcc-8004.921.1 at 865.630 kb on - strand, within Xcc-8004.921.1 at 865.728 kb on + strand, within Xcc-8004.921.1 at 865.728 kb on + strand, within Xcc-8004.921.1 at 865.729 kb on - strand, within Xcc-8004.921.1 at 865.731 kb on + strand, within Xcc-8004.921.1 at 865.731 kb on + strand, within Xcc-8004.921.1 at 865.731 kb on + strand, within Xcc-8004.921.1 at 865.732 kb on - strand, within Xcc-8004.921.1 at 865.732 kb on - strand, within Xcc-8004.921.1 at 865.732 kb on - strand, within Xcc-8004.921.1 at 865.795 kb on - strand, within Xcc-8004.921.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 862,518 + Xcc-8004.918.1 0.23 -0.2 862,518 + Xcc-8004.918.1 0.23 -0.4 862,519 - Xcc-8004.918.1 0.23 +1.1 862,519 - Xcc-8004.918.1 0.23 +0.9 862,519 - Xcc-8004.918.1 0.23 +0.7 862,639 - Xcc-8004.918.1 0.34 +0.8 862,639 - Xcc-8004.918.1 0.34 -0.0 862,639 - Xcc-8004.918.1 0.34 +1.0 862,639 - Xcc-8004.918.1 0.34 -0.9 862,641 + Xcc-8004.918.1 0.35 -0.5 862,719 + Xcc-8004.918.1 0.42 -1.6 862,720 - Xcc-8004.918.1 0.42 +1.1 862,794 + Xcc-8004.918.1 0.49 -0.2 862,794 + Xcc-8004.918.1 0.49 +0.6 862,794 + Xcc-8004.918.1 0.49 +1.5 862,795 - Xcc-8004.918.1 0.49 -1.3 862,833 + Xcc-8004.918.1 0.53 -0.3 862,833 + Xcc-8004.918.1 0.53 +0.6 862,834 - Xcc-8004.918.1 0.53 +1.9 862,834 - Xcc-8004.918.1 0.53 +0.1 862,872 + Xcc-8004.918.1 0.57 -0.9 862,899 + Xcc-8004.918.1 0.59 -0.1 863,284 - +0.4 863,396 + +0.5 863,396 + -1.4 863,396 + +0.4 863,429 + -1.5 863,429 + -0.5 863,430 - +0.9 863,430 - -0.0 863,430 - +0.9 863,507 + +0.4 863,507 + -0.0 863,778 - Xcc-8004.919.1 0.28 -0.5 863,999 - Xcc-8004.919.1 0.43 -0.4 864,032 + Xcc-8004.919.1 0.46 -1.2 864,033 - Xcc-8004.919.1 0.46 -0.3 864,033 - Xcc-8004.919.1 0.46 -1.2 864,119 + Xcc-8004.919.1 0.52 -0.6 864,119 + Xcc-8004.919.1 0.52 +1.4 864,120 - Xcc-8004.919.1 0.52 -0.8 864,182 + Xcc-8004.919.1 0.56 -0.2 864,182 + Xcc-8004.919.1 0.56 +0.2 864,182 + Xcc-8004.919.1 0.56 +0.1 864,183 - Xcc-8004.919.1 0.56 -0.9 864,183 - Xcc-8004.919.1 0.56 +1.6 864,183 - Xcc-8004.919.1 0.56 -0.9 864,183 - Xcc-8004.919.1 0.56 +0.4 864,183 - Xcc-8004.919.1 0.56 -0.2 864,356 + Xcc-8004.919.1 0.69 +0.1 864,356 + Xcc-8004.919.1 0.69 +0.6 864,357 - Xcc-8004.919.1 0.69 +0.5 864,357 - Xcc-8004.919.1 0.69 -0.2 864,450 - Xcc-8004.919.1 0.75 +0.1 864,572 + Xcc-8004.919.1 0.84 +1.7 864,572 + Xcc-8004.919.1 0.84 +0.3 864,572 + Xcc-8004.919.1 0.84 -1.5 864,572 + Xcc-8004.919.1 0.84 +0.0 864,573 - Xcc-8004.919.1 0.84 +1.1 864,573 - Xcc-8004.919.1 0.84 +1.7 864,666 + +1.3 864,667 - -0.7 864,800 - -0.3 864,800 - -1.2 864,800 - +0.3 864,800 - -0.6 864,999 + Xcc-8004.921.1 0.20 -0.2 865,104 + Xcc-8004.921.1 0.29 +0.8 865,105 - Xcc-8004.921.1 0.29 -1.2 865,266 + Xcc-8004.921.1 0.43 -1.0 865,267 - Xcc-8004.921.1 0.43 -2.6 865,267 - Xcc-8004.921.1 0.43 +0.7 865,267 - Xcc-8004.921.1 0.43 +0.4 865,534 - Xcc-8004.921.1 0.66 +0.5 865,619 + Xcc-8004.921.1 0.74 +0.3 865,629 + Xcc-8004.921.1 0.75 +0.2 865,629 + Xcc-8004.921.1 0.75 +2.1 865,630 - Xcc-8004.921.1 0.75 +1.1 865,630 - Xcc-8004.921.1 0.75 -0.5 865,630 - Xcc-8004.921.1 0.75 +0.5 865,728 + Xcc-8004.921.1 0.83 -1.2 865,728 + Xcc-8004.921.1 0.83 -0.2 865,729 - Xcc-8004.921.1 0.83 -0.9 865,731 + Xcc-8004.921.1 0.84 +1.7 865,731 + Xcc-8004.921.1 0.84 -1.4 865,731 + Xcc-8004.921.1 0.84 -0.7 865,732 - Xcc-8004.921.1 0.84 -2.2 865,732 - Xcc-8004.921.1 0.84 -1.2 865,732 - Xcc-8004.921.1 0.84 -0.5 865,795 - Xcc-8004.921.1 0.89 -0.9
Or see this region's nucleotide sequence