Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.823.1 and Xcc-8004.824.1 are separated by 224 nucleotides Xcc-8004.824.1 and Xcc-8004.825.1 are separated by 708 nucleotides
Xcc-8004.823.1: Xcc-8004.823.1 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 771,147 to 773,375
Xcc-8004.823.1
Xcc-8004.824.1: Xcc-8004.824.1 - Aminopeptidase, at 773,600 to 775,249
Xcc-8004.824.1
Xcc-8004.825.1: Xcc-8004.825.1 - sulfur deprivation response regulator, at 775,958 to 777,796
Xcc-8004.825.1
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.655 kb on - strand, within Xcc-8004.823.1 at 772.655 kb on - strand, within Xcc-8004.823.1 at 772.708 kb on + strand, within Xcc-8004.823.1 at 772.708 kb on + strand, within Xcc-8004.823.1 at 772.709 kb on - strand, within Xcc-8004.823.1 at 772.709 kb on - strand, within Xcc-8004.823.1 at 772.917 kb on - strand, within Xcc-8004.823.1 at 772.917 kb on - strand, within Xcc-8004.823.1 at 772.924 kb on + strand, within Xcc-8004.823.1 at 772.924 kb on + strand, within Xcc-8004.823.1 at 772.925 kb on - strand, within Xcc-8004.823.1 at 772.925 kb on - strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.972 kb on + strand, within Xcc-8004.823.1 at 772.973 kb on - strand, within Xcc-8004.823.1 at 772.973 kb on - strand, within Xcc-8004.823.1 at 772.973 kb on - strand, within Xcc-8004.823.1 at 773.050 kb on + strand, within Xcc-8004.823.1 at 773.136 kb on + strand, within Xcc-8004.823.1 at 773.189 kb on + strand at 773.190 kb on - strand at 773.210 kb on - strand at 773.274 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.359 kb on - strand at 773.359 kb on - strand at 773.359 kb on - strand at 773.359 kb on - strand at 773.462 kb on + strand at 773.480 kb on - strand at 773.483 kb on - strand at 773.505 kb on + strand at 773.505 kb on + strand at 773.505 kb on + strand at 773.506 kb on - strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.509 kb on + strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.510 kb on - strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.529 kb on + strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.530 kb on - strand at 773.560 kb on + strand at 773.560 kb on + strand at 773.561 kb on - strand at 773.561 kb on - strand at 773.720 kb on + strand at 773.720 kb on + strand at 773.721 kb on - strand at 773.768 kb on + strand, within Xcc-8004.824.1 at 773.768 kb on + strand, within Xcc-8004.824.1 at 773.769 kb on - strand, within Xcc-8004.824.1 at 773.870 kb on - strand, within Xcc-8004.824.1 at 773.887 kb on + strand, within Xcc-8004.824.1 at 773.887 kb on + strand, within Xcc-8004.824.1 at 773.887 kb on + strand, within Xcc-8004.824.1 at 773.888 kb on - strand, within Xcc-8004.824.1 at 773.890 kb on + strand, within Xcc-8004.824.1 at 773.890 kb on + strand, within Xcc-8004.824.1 at 773.891 kb on - strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.146 kb on + strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.147 kb on - strand, within Xcc-8004.824.1 at 774.149 kb on + strand, within Xcc-8004.824.1 at 774.149 kb on + strand, within Xcc-8004.824.1 at 774.150 kb on - strand, within Xcc-8004.824.1 at 774.150 kb on - strand, within Xcc-8004.824.1 at 774.164 kb on + strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.165 kb on - strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.170 kb on + strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.171 kb on - strand, within Xcc-8004.824.1 at 774.237 kb on - strand, within Xcc-8004.824.1 at 774.237 kb on - strand, within Xcc-8004.824.1 at 774.237 kb on - strand, within Xcc-8004.824.1 at 774.458 kb on + strand, within Xcc-8004.824.1 at 774.459 kb on - strand, within Xcc-8004.824.1 at 774.459 kb on - strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.542 kb on + strand, within Xcc-8004.824.1 at 774.543 kb on - strand, within Xcc-8004.824.1 at 774.543 kb on - strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.746 kb on + strand, within Xcc-8004.824.1 at 774.747 kb on - strand, within Xcc-8004.824.1 at 774.747 kb on - strand, within Xcc-8004.824.1 at 774.839 kb on - strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.842 kb on + strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.843 kb on - strand, within Xcc-8004.824.1 at 774.908 kb on + strand, within Xcc-8004.824.1 at 774.909 kb on - strand, within Xcc-8004.824.1 at 774.938 kb on + strand, within Xcc-8004.824.1 at 774.939 kb on - strand, within Xcc-8004.824.1 at 774.996 kb on - strand, within Xcc-8004.824.1 at 775.058 kb on + strand, within Xcc-8004.824.1 at 775.058 kb on + strand, within Xcc-8004.824.1 at 775.059 kb on - strand, within Xcc-8004.824.1 at 775.073 kb on + strand, within Xcc-8004.824.1 at 775.074 kb on - strand, within Xcc-8004.824.1 at 775.145 kb on + strand at 775.146 kb on - strand at 775.247 kb on + strand at 775.247 kb on + strand at 775.247 kb on + strand at 775.248 kb on - strand at 775.248 kb on - strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.277 kb on + strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.278 kb on - strand at 775.289 kb on + strand at 775.289 kb on + strand at 775.289 kb on + strand at 775.289 kb on + strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.290 kb on - strand at 775.353 kb on + strand at 775.467 kb on + strand at 775.468 kb on - strand at 775.468 kb on - strand at 775.486 kb on + strand at 775.486 kb on + strand at 775.486 kb on + strand at 775.486 kb on + strand at 775.487 kb on - strand at 775.487 kb on - strand at 775.487 kb on - strand at 775.498 kb on + strand at 775.498 kb on + strand at 775.499 kb on - strand at 775.556 kb on + strand at 775.556 kb on + strand at 775.557 kb on - strand at 775.557 kb on - strand at 775.557 kb on - strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.744 kb on + strand at 775.745 kb on - strand at 775.745 kb on - strand at 775.745 kb on - strand at 775.926 kb on + strand at 775.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 772,655 - Xcc-8004.823.1 0.68 -0.3 772,655 - Xcc-8004.823.1 0.68 -0.2 772,708 + Xcc-8004.823.1 0.70 -1.0 772,708 + Xcc-8004.823.1 0.70 +0.7 772,709 - Xcc-8004.823.1 0.70 +0.7 772,709 - Xcc-8004.823.1 0.70 +1.4 772,917 - Xcc-8004.823.1 0.79 +1.2 772,917 - Xcc-8004.823.1 0.79 +0.7 772,924 + Xcc-8004.823.1 0.80 +0.4 772,924 + Xcc-8004.823.1 0.80 -2.5 772,925 - Xcc-8004.823.1 0.80 -1.8 772,925 - Xcc-8004.823.1 0.80 -0.2 772,972 + Xcc-8004.823.1 0.82 -0.5 772,972 + Xcc-8004.823.1 0.82 -0.9 772,972 + Xcc-8004.823.1 0.82 -1.2 772,972 + Xcc-8004.823.1 0.82 -0.3 772,973 - Xcc-8004.823.1 0.82 -1.3 772,973 - Xcc-8004.823.1 0.82 -2.0 772,973 - Xcc-8004.823.1 0.82 -0.9 773,050 + Xcc-8004.823.1 0.85 +0.3 773,136 + Xcc-8004.823.1 0.89 -0.2 773,189 + -1.2 773,190 - +0.0 773,210 - -1.0 773,274 + +0.6 773,358 + +1.3 773,358 + -2.0 773,359 - -1.1 773,359 - +0.9 773,359 - -2.2 773,359 - +0.7 773,462 + +0.3 773,480 - +0.7 773,483 - +0.3 773,505 + -0.9 773,505 + +2.6 773,505 + -0.2 773,506 - +0.1 773,509 + -0.6 773,509 + +0.5 773,509 + -1.0 773,509 + +0.1 773,509 + +0.8 773,509 + -1.3 773,510 - -0.2 773,510 - +0.1 773,510 - +0.4 773,510 - +0.3 773,510 - +0.8 773,510 - +0.1 773,529 + +0.6 773,529 + +0.2 773,529 + +0.5 773,529 + -1.0 773,529 + +1.7 773,529 + +0.4 773,530 - +1.1 773,530 - -1.1 773,530 - +0.1 773,530 - +0.4 773,530 - -0.2 773,530 - +1.2 773,530 - -0.2 773,560 + -0.1 773,560 + -0.6 773,561 - +0.9 773,561 - -2.0 773,720 + -1.3 773,720 + +0.2 773,721 - -0.5 773,768 + Xcc-8004.824.1 0.10 -0.7 773,768 + Xcc-8004.824.1 0.10 -0.9 773,769 - Xcc-8004.824.1 0.10 -0.3 773,870 - Xcc-8004.824.1 0.16 +0.0 773,887 + Xcc-8004.824.1 0.17 -0.7 773,887 + Xcc-8004.824.1 0.17 +1.1 773,887 + Xcc-8004.824.1 0.17 -0.5 773,888 - Xcc-8004.824.1 0.17 +1.2 773,890 + Xcc-8004.824.1 0.18 +0.0 773,890 + Xcc-8004.824.1 0.18 +1.1 773,891 - Xcc-8004.824.1 0.18 +0.7 774,146 + Xcc-8004.824.1 0.33 +0.1 774,146 + Xcc-8004.824.1 0.33 +1.1 774,146 + Xcc-8004.824.1 0.33 -0.3 774,146 + Xcc-8004.824.1 0.33 -0.4 774,146 + Xcc-8004.824.1 0.33 -0.4 774,146 + Xcc-8004.824.1 0.33 -0.6 774,146 + Xcc-8004.824.1 0.33 -1.4 774,146 + Xcc-8004.824.1 0.33 -0.6 774,146 + Xcc-8004.824.1 0.33 +1.0 774,146 + Xcc-8004.824.1 0.33 +0.8 774,147 - Xcc-8004.824.1 0.33 -1.5 774,147 - Xcc-8004.824.1 0.33 +0.9 774,147 - Xcc-8004.824.1 0.33 -1.7 774,147 - Xcc-8004.824.1 0.33 -0.9 774,147 - Xcc-8004.824.1 0.33 +0.4 774,147 - Xcc-8004.824.1 0.33 +0.5 774,147 - Xcc-8004.824.1 0.33 -1.7 774,147 - Xcc-8004.824.1 0.33 -0.7 774,147 - Xcc-8004.824.1 0.33 -1.3 774,147 - Xcc-8004.824.1 0.33 -0.3 774,149 + Xcc-8004.824.1 0.33 +0.4 774,149 + Xcc-8004.824.1 0.33 +0.1 774,150 - Xcc-8004.824.1 0.33 -1.4 774,150 - Xcc-8004.824.1 0.33 -0.2 774,164 + Xcc-8004.824.1 0.34 -0.8 774,165 - Xcc-8004.824.1 0.34 -0.3 774,165 - Xcc-8004.824.1 0.34 +1.5 774,165 - Xcc-8004.824.1 0.34 +0.5 774,165 - Xcc-8004.824.1 0.34 +0.4 774,170 + Xcc-8004.824.1 0.35 -0.1 774,170 + Xcc-8004.824.1 0.35 -1.5 774,170 + Xcc-8004.824.1 0.35 +0.2 774,170 + Xcc-8004.824.1 0.35 -0.2 774,170 + Xcc-8004.824.1 0.35 -1.7 774,170 + Xcc-8004.824.1 0.35 -0.8 774,171 - Xcc-8004.824.1 0.35 -1.1 774,171 - Xcc-8004.824.1 0.35 +1.1 774,171 - Xcc-8004.824.1 0.35 -0.7 774,171 - Xcc-8004.824.1 0.35 -0.9 774,171 - Xcc-8004.824.1 0.35 -0.5 774,171 - Xcc-8004.824.1 0.35 -0.2 774,237 - Xcc-8004.824.1 0.39 -2.2 774,237 - Xcc-8004.824.1 0.39 -1.0 774,237 - Xcc-8004.824.1 0.39 -0.9 774,458 + Xcc-8004.824.1 0.52 +0.0 774,459 - Xcc-8004.824.1 0.52 -0.4 774,459 - Xcc-8004.824.1 0.52 -0.1 774,542 + Xcc-8004.824.1 0.57 +0.7 774,542 + Xcc-8004.824.1 0.57 +0.3 774,542 + Xcc-8004.824.1 0.57 +1.2 774,542 + Xcc-8004.824.1 0.57 +1.4 774,543 - Xcc-8004.824.1 0.57 +0.5 774,543 - Xcc-8004.824.1 0.57 -0.1 774,746 + Xcc-8004.824.1 0.69 -0.4 774,746 + Xcc-8004.824.1 0.69 -0.2 774,746 + Xcc-8004.824.1 0.69 +0.4 774,746 + Xcc-8004.824.1 0.69 +0.0 774,747 - Xcc-8004.824.1 0.70 -0.7 774,747 - Xcc-8004.824.1 0.70 +0.6 774,839 - Xcc-8004.824.1 0.75 -0.3 774,842 + Xcc-8004.824.1 0.75 -0.5 774,842 + Xcc-8004.824.1 0.75 +0.9 774,842 + Xcc-8004.824.1 0.75 -0.3 774,842 + Xcc-8004.824.1 0.75 -0.3 774,842 + Xcc-8004.824.1 0.75 +0.9 774,842 + Xcc-8004.824.1 0.75 -0.3 774,843 - Xcc-8004.824.1 0.75 -0.9 774,843 - Xcc-8004.824.1 0.75 -1.6 774,843 - Xcc-8004.824.1 0.75 -0.9 774,843 - Xcc-8004.824.1 0.75 +0.2 774,843 - Xcc-8004.824.1 0.75 +0.0 774,843 - Xcc-8004.824.1 0.75 -1.9 774,908 + Xcc-8004.824.1 0.79 +0.2 774,909 - Xcc-8004.824.1 0.79 -2.1 774,938 + Xcc-8004.824.1 0.81 -0.7 774,939 - Xcc-8004.824.1 0.81 -1.6 774,996 - Xcc-8004.824.1 0.85 -0.1 775,058 + Xcc-8004.824.1 0.88 +0.5 775,058 + Xcc-8004.824.1 0.88 +2.1 775,059 - Xcc-8004.824.1 0.88 -1.7 775,073 + Xcc-8004.824.1 0.89 -0.3 775,074 - Xcc-8004.824.1 0.89 +0.9 775,145 + -0.4 775,146 - -1.3 775,247 + +0.2 775,247 + +0.6 775,247 + +0.4 775,248 - +0.7 775,248 - +0.3 775,277 + +0.5 775,277 + -0.7 775,277 + -0.7 775,277 + +0.0 775,277 + +1.0 775,278 - -1.0 775,278 - -0.4 775,278 - -0.3 775,278 - -1.3 775,278 - -1.9 775,289 + +1.0 775,289 + -1.2 775,289 + +0.7 775,289 + +1.1 775,290 - -0.9 775,290 - +0.5 775,290 - +0.8 775,290 - +1.9 775,290 - +0.3 775,290 - +0.3 775,290 - -0.1 775,353 + -1.2 775,467 + -0.5 775,468 - -1.4 775,468 - +0.4 775,486 + -1.3 775,486 + +1.0 775,486 + -0.5 775,486 + -0.0 775,487 - +0.2 775,487 - +0.3 775,487 - +0.7 775,498 + -0.9 775,498 + -0.5 775,499 - +0.9 775,556 + -0.1 775,556 + -1.0 775,557 - -0.2 775,557 - -1.2 775,557 - +1.1 775,744 + +1.2 775,744 + -1.7 775,744 + +1.2 775,744 + -0.8 775,744 + -0.6 775,745 - +0.7 775,745 - -1.8 775,745 - +0.8 775,926 + -0.6 775,927 - +0.3
Or see this region's nucleotide sequence