Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.790.1 and Xcc-8004.791.1 are separated by 38 nucleotides Xcc-8004.791.1 and Xcc-8004.792.1 are separated by 190 nucleotides Xcc-8004.792.1 and Xcc-8004.793.1 are separated by 46 nucleotides Xcc-8004.793.1 and Xcc-8004.794.1 are separated by 22 nucleotides
Xcc-8004.790.1: Xcc-8004.790.1 - putative; ORF located using Glimmer/Genemark, at 735,393 to 736,244
Xcc-8004.790.1
Xcc-8004.791.1: Xcc-8004.791.1 - FIG01211375: hypothetical protein, at 736,283 to 736,594
Xcc-8004.791.1
Xcc-8004.792.1: Xcc-8004.792.1 - FIG01211403: hypothetical protein, at 736,785 to 737,423
Xcc-8004.792.1
Xcc-8004.793.1: Xcc-8004.793.1 - putative; ORF located using Glimmer/Genemark, at 737,470 to 737,766
Xcc-8004.793.1
Xcc-8004.794.1: Xcc-8004.794.1 - M. jannaschii predicted coding region MJ1233, at 737,789 to 738,991
Xcc-8004.794.1
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 735.824 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.104 kb on - strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.279 kb on + strand at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.437 kb on - strand, within Xcc-8004.791.1 at 736.470 kb on + strand, within Xcc-8004.791.1 at 736.500 kb on - strand, within Xcc-8004.791.1 at 736.734 kb on + strand at 736.734 kb on + strand at 736.734 kb on + strand at 736.844 kb on - strand at 736.850 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.350 kb on - strand, within Xcc-8004.792.1 at 737.437 kb on + strand at 737.437 kb on + strand at 737.437 kb on + strand at 737.437 kb on + strand at 737.438 kb on - strand at 737.923 kb on - strand, within Xcc-8004.794.1 at 737.923 kb on - strand, within Xcc-8004.794.1 at 737.970 kb on + strand, within Xcc-8004.794.1 at 737.971 kb on - strand, within Xcc-8004.794.1 at 737.971 kb on - strand, within Xcc-8004.794.1 at 737.971 kb on - strand, within Xcc-8004.794.1 at 737.986 kb on - strand, within Xcc-8004.794.1 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.226 kb on - strand, within Xcc-8004.794.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 735,824 + Xcc-8004.790.1 0.51 +1.1 736,103 + Xcc-8004.790.1 0.83 +0.8 736,103 + Xcc-8004.790.1 0.83 -0.1 736,104 - Xcc-8004.790.1 0.83 +0.9 736,106 + Xcc-8004.790.1 0.84 +1.2 736,106 + Xcc-8004.790.1 0.84 +0.2 736,279 + -1.6 736,371 + Xcc-8004.791.1 0.28 +0.6 736,371 + Xcc-8004.791.1 0.28 -1.3 736,436 + Xcc-8004.791.1 0.49 +1.8 736,436 + Xcc-8004.791.1 0.49 +1.9 736,437 - Xcc-8004.791.1 0.49 -0.8 736,470 + Xcc-8004.791.1 0.60 -0.8 736,500 - Xcc-8004.791.1 0.70 +1.1 736,734 + -1.7 736,734 + +0.1 736,734 + +0.2 736,844 - +0.0 736,850 - Xcc-8004.792.1 0.10 +0.2 737,056 - Xcc-8004.792.1 0.42 +1.0 737,056 - Xcc-8004.792.1 0.42 -1.4 737,056 - Xcc-8004.792.1 0.42 +0.2 737,096 - Xcc-8004.792.1 0.49 -1.9 737,096 - Xcc-8004.792.1 0.49 +0.6 737,350 - Xcc-8004.792.1 0.88 -0.0 737,437 + -0.6 737,437 + -0.5 737,437 + +1.3 737,437 + -0.1 737,438 - -0.2 737,923 - Xcc-8004.794.1 0.11 -1.1 737,923 - Xcc-8004.794.1 0.11 +1.5 737,970 + Xcc-8004.794.1 0.15 -0.9 737,971 - Xcc-8004.794.1 0.15 -1.7 737,971 - Xcc-8004.794.1 0.15 +1.0 737,971 - Xcc-8004.794.1 0.15 +1.1 737,986 - Xcc-8004.794.1 0.16 +1.4 738,225 + Xcc-8004.794.1 0.36 -0.5 738,225 + Xcc-8004.794.1 0.36 -1.1 738,226 - Xcc-8004.794.1 0.36 +0.6
Or see this region's nucleotide sequence