Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.789.1 and Xcc-8004.790.1 are separated by 353 nucleotides Xcc-8004.790.1 and Xcc-8004.791.1 are separated by 38 nucleotides Xcc-8004.791.1 and Xcc-8004.792.1 are separated by 190 nucleotides
Xcc-8004.789.1: Xcc-8004.789.1 - Thioredoxin reductase (EC 1.8.1.9), at 734,140 to 735,039
Xcc-8004.789.1
Xcc-8004.790.1: Xcc-8004.790.1 - putative; ORF located using Glimmer/Genemark, at 735,393 to 736,244
Xcc-8004.790.1
Xcc-8004.791.1: Xcc-8004.791.1 - FIG01211375: hypothetical protein, at 736,283 to 736,594
Xcc-8004.791.1
Xcc-8004.792.1: Xcc-8004.792.1 - FIG01211403: hypothetical protein, at 736,785 to 737,423
Xcc-8004.792.1
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.548 kb on + strand, within Xcc-8004.789.1 at 734.549 kb on - strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.690 kb on + strand, within Xcc-8004.789.1 at 734.690 kb on + strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.885 kb on + strand, within Xcc-8004.789.1 at 734.885 kb on + strand, within Xcc-8004.789.1 at 734.886 kb on - strand, within Xcc-8004.789.1 at 734.886 kb on - strand, within Xcc-8004.789.1 at 735.090 kb on + strand at 735.101 kb on - strand at 735.129 kb on + strand at 735.129 kb on + strand at 735.130 kb on - strand at 735.170 kb on + strand at 735.171 kb on - strand at 735.171 kb on - strand at 735.171 kb on - strand at 735.202 kb on - strand at 735.282 kb on - strand at 735.291 kb on - strand at 735.291 kb on - strand at 735.292 kb on + strand at 735.306 kb on - strand at 735.423 kb on - strand at 735.423 kb on - strand at 735.672 kb on - strand, within Xcc-8004.790.1 at 735.824 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.104 kb on - strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.279 kb on + strand at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.437 kb on - strand, within Xcc-8004.791.1 at 736.470 kb on + strand, within Xcc-8004.791.1 at 736.500 kb on - strand, within Xcc-8004.791.1 at 736.734 kb on + strand at 736.734 kb on + strand at 736.734 kb on + strand at 736.844 kb on - strand at 736.850 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 734,548 + Xcc-8004.789.1 0.45 -0.4 734,549 - Xcc-8004.789.1 0.45 -0.4 734,568 + Xcc-8004.789.1 0.48 +0.7 734,568 + Xcc-8004.789.1 0.48 +0.9 734,568 + Xcc-8004.789.1 0.48 -0.7 734,568 + Xcc-8004.789.1 0.48 -1.9 734,568 + Xcc-8004.789.1 0.48 -2.2 734,569 - Xcc-8004.789.1 0.48 +0.0 734,569 - Xcc-8004.789.1 0.48 -0.7 734,569 - Xcc-8004.789.1 0.48 +0.4 734,569 - Xcc-8004.789.1 0.48 +2.0 734,690 + Xcc-8004.789.1 0.61 +1.7 734,690 + Xcc-8004.789.1 0.61 +2.0 734,691 - Xcc-8004.789.1 0.61 -1.5 734,691 - Xcc-8004.789.1 0.61 +0.0 734,691 - Xcc-8004.789.1 0.61 -0.1 734,885 + Xcc-8004.789.1 0.83 +1.3 734,885 + Xcc-8004.789.1 0.83 -1.3 734,886 - Xcc-8004.789.1 0.83 -1.4 734,886 - Xcc-8004.789.1 0.83 -0.1 735,090 + -1.2 735,101 - -1.5 735,129 + -0.3 735,129 + +0.7 735,130 - -0.4 735,170 + -0.5 735,171 - -1.3 735,171 - -0.9 735,171 - +0.7 735,202 - +0.2 735,282 - -0.9 735,291 - +0.4 735,291 - +0.5 735,292 + -1.2 735,306 - +1.5 735,423 - -3.1 735,423 - +0.0 735,672 - Xcc-8004.790.1 0.33 +0.9 735,824 + Xcc-8004.790.1 0.51 +1.1 736,103 + Xcc-8004.790.1 0.83 +0.8 736,103 + Xcc-8004.790.1 0.83 -0.1 736,104 - Xcc-8004.790.1 0.83 +0.9 736,106 + Xcc-8004.790.1 0.84 +1.2 736,106 + Xcc-8004.790.1 0.84 +0.2 736,279 + -1.6 736,371 + Xcc-8004.791.1 0.28 +0.6 736,371 + Xcc-8004.791.1 0.28 -1.3 736,436 + Xcc-8004.791.1 0.49 +1.8 736,436 + Xcc-8004.791.1 0.49 +1.9 736,437 - Xcc-8004.791.1 0.49 -0.8 736,470 + Xcc-8004.791.1 0.60 -0.8 736,500 - Xcc-8004.791.1 0.70 +1.1 736,734 + -1.7 736,734 + +0.1 736,734 + +0.2 736,844 - +0.0 736,850 - Xcc-8004.792.1 0.10 +0.2 737,056 - Xcc-8004.792.1 0.42 +1.0 737,056 - Xcc-8004.792.1 0.42 -1.4 737,056 - Xcc-8004.792.1 0.42 +0.2 737,096 - Xcc-8004.792.1 0.49 -1.9 737,096 - Xcc-8004.792.1 0.49 +0.6
Or see this region's nucleotide sequence