Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.736.1 and Xcc-8004.737.1 overlap by 4 nucleotides Xcc-8004.737.1 and Xcc-8004.738.1 overlap by 4 nucleotides Xcc-8004.738.1 and Xcc-8004.739.1 are separated by 2 nucleotides Xcc-8004.739.1 and Xcc-8004.740.1 overlap by 4 nucleotides
Xcc-8004.736.1: Xcc-8004.736.1 - hypothetical protein, at 686,074 to 686,502
Xcc-8004.736.1
Xcc-8004.737.1: Xcc-8004.737.1 - Malonate decarboxylase beta subunit, at 686,499 to 687,413
Xcc-8004.737.1
Xcc-8004.738.1: Xcc-8004.738.1 - Malonate decarboxylase gamma subunit, at 687,410 to 688,114
Xcc-8004.738.1
Xcc-8004.739.1: Xcc-8004.739.1 - Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-), at 688,117 to 688,758
Xcc-8004.739.1
Xcc-8004.740.1: Xcc-8004.740.1 - Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25), at 688,755 to 689,921
Xcc-8004.740.1
Position (kb) 687
688
689 Strain fitness (log2 ratio) -1
0
1 at 686.436 kb on + strand, within Xcc-8004.736.1 at 686.437 kb on - strand, within Xcc-8004.736.1 at 686.533 kb on - strand at 686.535 kb on + strand at 686.535 kb on + strand at 686.535 kb on + strand at 687.133 kb on - strand, within Xcc-8004.737.1 at 687.686 kb on + strand, within Xcc-8004.738.1 at 687.687 kb on - strand, within Xcc-8004.738.1 at 687.942 kb on - strand, within Xcc-8004.738.1 at 687.950 kb on - strand, within Xcc-8004.738.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.501 kb on + strand, within Xcc-8004.739.1 at 688.502 kb on - strand, within Xcc-8004.739.1 at 688.502 kb on - strand, within Xcc-8004.739.1 at 688.664 kb on - strand, within Xcc-8004.739.1 at 688.760 kb on + strand at 688.933 kb on + strand, within Xcc-8004.740.1 at 688.934 kb on - strand, within Xcc-8004.740.1 at 688.962 kb on - strand, within Xcc-8004.740.1 at 689.048 kb on + strand, within Xcc-8004.740.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 686,436 + Xcc-8004.736.1 0.84 +0.8 686,437 - Xcc-8004.736.1 0.85 -1.6 686,533 - -0.6 686,535 + -0.2 686,535 + +0.3 686,535 + -0.9 687,133 - Xcc-8004.737.1 0.69 -1.2 687,686 + Xcc-8004.738.1 0.39 -1.0 687,687 - Xcc-8004.738.1 0.39 +1.1 687,942 - Xcc-8004.738.1 0.75 -1.0 687,950 - Xcc-8004.738.1 0.77 +1.1 688,501 + Xcc-8004.739.1 0.60 +0.7 688,501 + Xcc-8004.739.1 0.60 -0.2 688,501 + Xcc-8004.739.1 0.60 +0.8 688,502 - Xcc-8004.739.1 0.60 +1.1 688,502 - Xcc-8004.739.1 0.60 -1.7 688,664 - Xcc-8004.739.1 0.85 -0.0 688,760 + +1.6 688,933 + Xcc-8004.740.1 0.15 +0.2 688,934 - Xcc-8004.740.1 0.15 -0.6 688,962 - Xcc-8004.740.1 0.18 -1.0 689,048 + Xcc-8004.740.1 0.25 +0.7
Or see this region's nucleotide sequence