Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.670.1 and Xcc-8004.671.1 are separated by 414 nucleotides Xcc-8004.671.1 and Xcc-8004.672.1 are separated by 115 nucleotides Xcc-8004.672.1 and Xcc-8004.673.1 are separated by 285 nucleotides Xcc-8004.673.1 and Xcc-8004.674.1 are separated by 73 nucleotides
Xcc-8004.670.1: Xcc-8004.670.1 - ice nucleation protein, at 612,455 to 616,537
Xcc-8004.670.1
Xcc-8004.671.1: Xcc-8004.671.1 - DNA-binding protein Fis, at 616,952 to 617,224
Xcc-8004.671.1
Xcc-8004.672.1: Xcc-8004.672.1 - FIG01211636: hypothetical protein, at 617,340 to 618,629
Xcc-8004.672.1
Xcc-8004.673.1: Xcc-8004.673.1 - Transcriptional regulator pbsX family, at 618,915 to 619,367
Xcc-8004.673.1
Xcc-8004.674.1: Xcc-8004.674.1 - FIG01211343: hypothetical protein, at 619,441 to 619,935
Xcc-8004.674.1
Position (kb) 617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 616.356 kb on - strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.626 kb on + strand at 616.627 kb on - strand at 616.627 kb on - strand at 616.627 kb on - strand at 616.730 kb on - strand at 616.730 kb on - strand at 616.730 kb on - strand at 616.730 kb on - strand at 616.741 kb on + strand at 616.742 kb on - strand at 616.809 kb on + strand at 616.809 kb on + strand at 616.809 kb on + strand at 616.810 kb on - strand at 616.834 kb on + strand at 616.834 kb on + strand at 616.835 kb on - strand at 616.835 kb on - strand at 616.835 kb on - strand at 616.835 kb on - strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.909 kb on + strand at 616.910 kb on - strand at 616.910 kb on - strand at 616.910 kb on - strand at 616.953 kb on + strand at 616.953 kb on + strand at 616.954 kb on - strand at 616.954 kb on - strand at 617.281 kb on + strand at 617.282 kb on - strand at 617.458 kb on + strand at 617.458 kb on + strand at 617.458 kb on + strand at 617.459 kb on - strand at 617.459 kb on - strand at 617.459 kb on - strand at 617.766 kb on + strand, within Xcc-8004.672.1 at 617.766 kb on + strand, within Xcc-8004.672.1 at 618.184 kb on - strand, within Xcc-8004.672.1 at 618.194 kb on + strand, within Xcc-8004.672.1 at 618.194 kb on + strand, within Xcc-8004.672.1 at 618.195 kb on - strand, within Xcc-8004.672.1 at 618.195 kb on - strand, within Xcc-8004.672.1 at 618.195 kb on - strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.204 kb on + strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.205 kb on - strand, within Xcc-8004.672.1 at 618.450 kb on + strand, within Xcc-8004.672.1 at 618.451 kb on - strand, within Xcc-8004.672.1 at 618.451 kb on - strand, within Xcc-8004.672.1 at 618.451 kb on - strand, within Xcc-8004.672.1 at 618.513 kb on + strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.514 kb on - strand at 618.656 kb on + strand at 618.657 kb on - strand at 618.798 kb on + strand at 618.847 kb on - strand at 618.847 kb on - strand at 618.911 kb on + strand at 618.911 kb on + strand at 618.912 kb on - strand at 618.912 kb on - strand at 618.912 kb on - strand at 619.037 kb on - strand, within Xcc-8004.673.1 at 619.108 kb on + strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.109 kb on - strand, within Xcc-8004.673.1 at 619.269 kb on + strand, within Xcc-8004.673.1 at 619.269 kb on + strand, within Xcc-8004.673.1 at 619.269 kb on + strand, within Xcc-8004.673.1 at 619.270 kb on - strand, within Xcc-8004.673.1 at 619.270 kb on - strand, within Xcc-8004.673.1 at 619.270 kb on - strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.279 kb on + strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.280 kb on - strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.281 kb on + strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.282 kb on - strand, within Xcc-8004.673.1 at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.325 kb on + strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.326 kb on - strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.327 kb on + strand at 619.328 kb on - strand at 619.328 kb on - strand at 619.328 kb on - strand at 619.328 kb on - strand at 619.349 kb on + strand at 619.349 kb on + strand at 619.350 kb on - strand at 619.350 kb on - strand at 619.350 kb on - strand at 619.356 kb on + strand at 619.357 kb on - strand at 619.357 kb on - strand at 619.357 kb on - strand at 619.357 kb on - strand at 619.386 kb on + strand at 619.514 kb on - strand, within Xcc-8004.674.1 at 619.561 kb on + strand, within Xcc-8004.674.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 616,356 - +1.0 616,626 + +0.2 616,626 + +0.9 616,626 + -0.7 616,626 + +0.7 616,626 + -0.5 616,627 - -0.6 616,627 - +0.9 616,627 - +0.8 616,730 - -0.1 616,730 - -2.1 616,730 - -1.6 616,730 - +0.7 616,741 + -0.0 616,742 - +1.2 616,809 + +0.4 616,809 + -0.7 616,809 + +0.1 616,810 - -1.4 616,834 + +1.1 616,834 + -0.6 616,835 - -0.4 616,835 - +1.1 616,835 - +0.4 616,835 - +0.3 616,909 + -0.8 616,909 + +0.2 616,909 + -1.3 616,909 + -0.5 616,909 + -0.1 616,909 + +1.2 616,909 + -0.5 616,910 - +0.9 616,910 - -1.2 616,910 - +1.3 616,953 + -0.6 616,953 + -0.8 616,954 - +0.1 616,954 - +1.0 617,281 + +0.7 617,282 - +0.7 617,458 + -0.3 617,458 + -0.6 617,458 + +0.3 617,459 - -0.1 617,459 - -0.4 617,459 - -0.6 617,766 + Xcc-8004.672.1 0.33 -1.1 617,766 + Xcc-8004.672.1 0.33 +0.3 618,184 - Xcc-8004.672.1 0.65 +0.3 618,194 + Xcc-8004.672.1 0.66 -1.2 618,194 + Xcc-8004.672.1 0.66 -1.1 618,195 - Xcc-8004.672.1 0.66 +0.1 618,195 - Xcc-8004.672.1 0.66 -0.4 618,195 - Xcc-8004.672.1 0.66 -0.6 618,204 + Xcc-8004.672.1 0.67 +0.5 618,204 + Xcc-8004.672.1 0.67 +1.0 618,204 + Xcc-8004.672.1 0.67 +0.4 618,204 + Xcc-8004.672.1 0.67 -0.2 618,204 + Xcc-8004.672.1 0.67 +0.2 618,204 + Xcc-8004.672.1 0.67 -0.2 618,204 + Xcc-8004.672.1 0.67 +0.7 618,205 - Xcc-8004.672.1 0.67 -0.3 618,205 - Xcc-8004.672.1 0.67 -0.5 618,205 - Xcc-8004.672.1 0.67 -0.2 618,205 - Xcc-8004.672.1 0.67 -1.0 618,205 - Xcc-8004.672.1 0.67 +0.1 618,205 - Xcc-8004.672.1 0.67 +0.7 618,205 - Xcc-8004.672.1 0.67 -0.2 618,205 - Xcc-8004.672.1 0.67 -1.6 618,205 - Xcc-8004.672.1 0.67 +0.7 618,205 - Xcc-8004.672.1 0.67 -0.2 618,450 + Xcc-8004.672.1 0.86 -0.4 618,451 - Xcc-8004.672.1 0.86 -0.5 618,451 - Xcc-8004.672.1 0.86 -0.4 618,451 - Xcc-8004.672.1 0.86 -0.5 618,513 + +0.5 618,514 - -0.2 618,514 - +3.3 618,514 - -0.8 618,514 - +0.4 618,514 - +1.2 618,656 + -1.4 618,657 - +1.4 618,798 + +0.4 618,847 - +0.8 618,847 - -0.2 618,911 + +1.0 618,911 + +0.7 618,912 - +0.6 618,912 - +0.5 618,912 - +0.7 619,037 - Xcc-8004.673.1 0.27 -0.9 619,108 + Xcc-8004.673.1 0.43 +0.9 619,109 - Xcc-8004.673.1 0.43 -1.6 619,109 - Xcc-8004.673.1 0.43 +0.4 619,109 - Xcc-8004.673.1 0.43 +0.3 619,109 - Xcc-8004.673.1 0.43 +0.0 619,109 - Xcc-8004.673.1 0.43 -0.2 619,269 + Xcc-8004.673.1 0.78 -1.1 619,269 + Xcc-8004.673.1 0.78 +0.7 619,269 + Xcc-8004.673.1 0.78 -1.8 619,270 - Xcc-8004.673.1 0.78 +0.1 619,270 - Xcc-8004.673.1 0.78 +0.6 619,270 - Xcc-8004.673.1 0.78 -2.3 619,279 + Xcc-8004.673.1 0.80 +0.8 619,279 + Xcc-8004.673.1 0.80 -0.6 619,279 + Xcc-8004.673.1 0.80 -0.7 619,279 + Xcc-8004.673.1 0.80 +1.6 619,279 + Xcc-8004.673.1 0.80 +1.0 619,279 + Xcc-8004.673.1 0.80 +0.3 619,279 + Xcc-8004.673.1 0.80 -0.1 619,279 + Xcc-8004.673.1 0.80 +0.0 619,280 - Xcc-8004.673.1 0.81 +0.1 619,280 - Xcc-8004.673.1 0.81 -0.4 619,280 - Xcc-8004.673.1 0.81 +0.2 619,280 - Xcc-8004.673.1 0.81 +0.7 619,281 + Xcc-8004.673.1 0.81 -0.6 619,281 + Xcc-8004.673.1 0.81 -1.6 619,281 + Xcc-8004.673.1 0.81 +1.1 619,281 + Xcc-8004.673.1 0.81 -0.4 619,281 + Xcc-8004.673.1 0.81 +2.0 619,281 + Xcc-8004.673.1 0.81 -0.8 619,281 + Xcc-8004.673.1 0.81 -1.8 619,281 + Xcc-8004.673.1 0.81 +1.1 619,281 + Xcc-8004.673.1 0.81 -1.0 619,281 + Xcc-8004.673.1 0.81 -1.8 619,281 + Xcc-8004.673.1 0.81 +0.5 619,281 + Xcc-8004.673.1 0.81 -0.6 619,282 - Xcc-8004.673.1 0.81 -0.1 619,282 - Xcc-8004.673.1 0.81 -0.1 619,282 - Xcc-8004.673.1 0.81 -0.3 619,282 - Xcc-8004.673.1 0.81 +0.7 619,325 + +0.4 619,325 + -0.7 619,325 + +1.3 619,325 + -0.1 619,325 + -0.9 619,325 + +0.2 619,325 + -0.0 619,326 - +0.3 619,326 - +0.6 619,326 - -1.8 619,326 - -0.8 619,326 - -1.3 619,326 - +0.0 619,327 + -0.2 619,327 + -1.0 619,327 + -0.7 619,327 + +0.0 619,327 + +1.4 619,328 - +1.4 619,328 - -0.8 619,328 - -0.7 619,328 - +0.5 619,349 + +0.6 619,349 + +1.2 619,350 - +0.0 619,350 - -0.3 619,350 - +0.6 619,356 + +0.5 619,357 - +0.7 619,357 - +0.2 619,357 - +0.3 619,357 - +0.6 619,386 + +0.4 619,514 - Xcc-8004.674.1 0.15 -0.5 619,561 + Xcc-8004.674.1 0.24 +1.5
Or see this region's nucleotide sequence