Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5348.1 and Xcc-8004.5349.1 are separated by 264 nucleotides Xcc-8004.5349.1 and Xcc-8004.5350.1 are separated by 122 nucleotides Xcc-8004.5350.1 and Xcc-8004.5351.1 are separated by 185 nucleotides Xcc-8004.5351.1 and Xcc-8004.5352.1 are separated by 168 nucleotides
Xcc-8004.5348.1: Xcc-8004.5348.1 - hypothetical protein, at 5,077,352 to 5,077,909
Xcc-8004.5348.1
Xcc-8004.5349.1: Xcc-8004.5349.1 - FIG01210492: hypothetical protein, at 5,078,174 to 5,078,506
Xcc-8004.5349.1
Xcc-8004.5350.1: Xcc-8004.5350.1 - FIG01210151: hypothetical protein, at 5,078,629 to 5,078,853
Xcc-8004.5350.1
Xcc-8004.5351.1: Xcc-8004.5351.1 - HigA protein (antitoxin to HigB), at 5,079,039 to 5,079,329
Xcc-8004.5351.1
Xcc-8004.5352.1: Xcc-8004.5352.1 - Exodeoxyribonuclease V alpha chain (EC 3.1.11.5), at 5,079,498 to 5,081,735
Xcc-8004.5352.1
Position (kb) 5078
5079 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5077.725 kb on + strand, within Xcc-8004.5348.1 at 5077.726 kb on - strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.878 kb on + strand at 5077.878 kb on + strand at 5077.879 kb on - strand at 5077.903 kb on + strand at 5077.904 kb on - strand at 5077.910 kb on + strand at 5077.910 kb on + strand at 5077.911 kb on - strand at 5077.911 kb on - strand at 5077.920 kb on + strand at 5077.920 kb on + strand at 5077.920 kb on + strand at 5077.920 kb on + strand at 5077.921 kb on - strand at 5077.921 kb on - strand at 5077.980 kb on + strand at 5077.981 kb on - strand at 5077.981 kb on - strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.987 kb on - strand at 5078.038 kb on + strand at 5078.039 kb on - strand at 5078.039 kb on - strand at 5078.074 kb on + strand at 5078.074 kb on + strand at 5078.075 kb on - strand at 5078.075 kb on - strand at 5078.075 kb on - strand at 5078.090 kb on - strand at 5078.098 kb on + strand at 5078.098 kb on + strand at 5078.099 kb on - strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.375 kb on + strand, within Xcc-8004.5349.1 at 5078.375 kb on + strand, within Xcc-8004.5349.1 at 5078.387 kb on + strand, within Xcc-8004.5349.1 at 5078.388 kb on - strand, within Xcc-8004.5349.1 at 5078.388 kb on - strand, within Xcc-8004.5349.1 at 5078.388 kb on - strand, within Xcc-8004.5349.1 at 5078.484 kb on - strand at 5078.484 kb on - strand at 5078.504 kb on + strand at 5078.504 kb on + strand at 5078.504 kb on + strand at 5078.504 kb on + strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.688 kb on - strand, within Xcc-8004.5350.1 at 5078.688 kb on - strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.744 kb on - strand, within Xcc-8004.5350.1 at 5078.744 kb on - strand, within Xcc-8004.5350.1 at 5078.744 kb on - strand, within Xcc-8004.5350.1 at 5078.851 kb on + strand at 5078.851 kb on + strand at 5078.851 kb on + strand at 5078.852 kb on - strand at 5078.852 kb on - strand at 5078.869 kb on - strand at 5078.910 kb on + strand at 5078.911 kb on - strand at 5078.967 kb on + strand at 5078.968 kb on - strand at 5078.968 kb on - strand at 5078.985 kb on + strand at 5078.985 kb on + strand at 5078.985 kb on + strand at 5078.985 kb on + strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5079.106 kb on + strand, within Xcc-8004.5351.1 at 5079.107 kb on - strand, within Xcc-8004.5351.1 at 5079.228 kb on + strand, within Xcc-8004.5351.1 at 5079.229 kb on - strand, within Xcc-8004.5351.1 at 5079.229 kb on - strand, within Xcc-8004.5351.1 at 5079.318 kb on + strand at 5079.318 kb on + strand at 5079.318 kb on + strand at 5079.373 kb on - strand at 5079.373 kb on - strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.410 kb on + strand at 5079.410 kb on + strand at 5079.427 kb on + strand at 5079.427 kb on + strand at 5079.428 kb on - strand at 5079.441 kb on + strand at 5079.442 kb on - strand at 5079.442 kb on - strand at 5079.442 kb on - strand at 5079.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,077,725 + Xcc-8004.5348.1 0.67 -0.2 5,077,726 - Xcc-8004.5348.1 0.67 -1.6 5,077,834 + Xcc-8004.5348.1 0.86 +0.3 5,077,834 + Xcc-8004.5348.1 0.86 -0.1 5,077,834 + Xcc-8004.5348.1 0.86 -1.0 5,077,834 + Xcc-8004.5348.1 0.86 +1.2 5,077,834 + Xcc-8004.5348.1 0.86 +0.7 5,077,834 + Xcc-8004.5348.1 0.86 +0.6 5,077,834 + Xcc-8004.5348.1 0.86 -0.0 5,077,835 - Xcc-8004.5348.1 0.87 -1.1 5,077,835 - Xcc-8004.5348.1 0.87 -0.2 5,077,835 - Xcc-8004.5348.1 0.87 -0.6 5,077,835 - Xcc-8004.5348.1 0.87 -0.7 5,077,835 - Xcc-8004.5348.1 0.87 +0.5 5,077,878 + -1.2 5,077,878 + +0.5 5,077,879 - -0.1 5,077,903 + +0.4 5,077,904 - -0.5 5,077,910 + -0.3 5,077,910 + +0.3 5,077,911 - +0.9 5,077,911 - +0.3 5,077,920 + -1.3 5,077,920 + -1.3 5,077,920 + +0.6 5,077,920 + -0.3 5,077,921 - -0.4 5,077,921 - +1.1 5,077,980 + -0.3 5,077,981 - -1.4 5,077,981 - -0.4 5,077,986 + -1.0 5,077,986 + -0.4 5,077,986 + -0.8 5,077,986 + +0.6 5,077,986 + -0.7 5,077,986 + -0.4 5,077,987 - -1.1 5,078,038 + +0.7 5,078,039 - +0.6 5,078,039 - -1.4 5,078,074 + -1.8 5,078,074 + +2.2 5,078,075 - +1.3 5,078,075 - -1.0 5,078,075 - -0.6 5,078,090 - -1.8 5,078,098 + -1.9 5,078,098 + +1.1 5,078,099 - -1.0 5,078,124 + +0.7 5,078,124 + -0.5 5,078,124 + -2.2 5,078,124 + -1.0 5,078,124 + +0.3 5,078,125 - +1.0 5,078,125 - +0.9 5,078,125 - -1.3 5,078,125 - +1.1 5,078,125 - +0.3 5,078,125 - +1.2 5,078,125 - -1.1 5,078,125 - -1.0 5,078,375 + Xcc-8004.5349.1 0.60 +1.4 5,078,375 + Xcc-8004.5349.1 0.60 +0.2 5,078,387 + Xcc-8004.5349.1 0.64 +1.0 5,078,388 - Xcc-8004.5349.1 0.64 +2.3 5,078,388 - Xcc-8004.5349.1 0.64 +0.2 5,078,388 - Xcc-8004.5349.1 0.64 +0.8 5,078,484 - +0.0 5,078,484 - +1.5 5,078,504 + +1.1 5,078,504 + -2.0 5,078,504 + -0.8 5,078,504 + +0.4 5,078,505 - +0.1 5,078,505 - -0.9 5,078,505 - -1.7 5,078,505 - +0.9 5,078,505 - +2.7 5,078,687 + Xcc-8004.5350.1 0.26 -1.0 5,078,687 + Xcc-8004.5350.1 0.26 -1.0 5,078,687 + Xcc-8004.5350.1 0.26 -0.1 5,078,687 + Xcc-8004.5350.1 0.26 -1.3 5,078,687 + Xcc-8004.5350.1 0.26 +2.2 5,078,688 - Xcc-8004.5350.1 0.26 +1.0 5,078,688 - Xcc-8004.5350.1 0.26 +0.8 5,078,743 + Xcc-8004.5350.1 0.51 -0.1 5,078,743 + Xcc-8004.5350.1 0.51 -1.8 5,078,743 + Xcc-8004.5350.1 0.51 -1.5 5,078,743 + Xcc-8004.5350.1 0.51 +1.1 5,078,743 + Xcc-8004.5350.1 0.51 +0.6 5,078,744 - Xcc-8004.5350.1 0.51 -0.9 5,078,744 - Xcc-8004.5350.1 0.51 +1.0 5,078,744 - Xcc-8004.5350.1 0.51 -2.2 5,078,851 + +1.0 5,078,851 + -0.1 5,078,851 + -0.9 5,078,852 - -0.8 5,078,852 - +0.3 5,078,869 - -0.8 5,078,910 + -1.1 5,078,911 - +0.3 5,078,967 + -1.1 5,078,968 - +0.4 5,078,968 - +0.1 5,078,985 + -0.8 5,078,985 + +0.3 5,078,985 + +0.3 5,078,985 + +0.7 5,078,986 - -1.8 5,078,986 - -0.6 5,078,986 - -1.0 5,078,986 - +0.6 5,078,986 - -0.4 5,079,106 + Xcc-8004.5351.1 0.23 +0.7 5,079,107 - Xcc-8004.5351.1 0.23 +1.2 5,079,228 + Xcc-8004.5351.1 0.65 -2.6 5,079,229 - Xcc-8004.5351.1 0.65 -1.6 5,079,229 - Xcc-8004.5351.1 0.65 +0.6 5,079,318 + -1.2 5,079,318 + -0.8 5,079,318 + +0.2 5,079,373 - +0.8 5,079,373 - +1.5 5,079,391 + -0.7 5,079,391 + +0.7 5,079,391 + +0.2 5,079,391 + +0.4 5,079,391 + -0.2 5,079,391 + -0.4 5,079,391 + +0.4 5,079,391 + +0.7 5,079,391 + +1.3 5,079,391 + -0.8 5,079,391 + +0.3 5,079,391 + +1.2 5,079,391 + -0.1 5,079,391 + -1.4 5,079,392 - +1.6 5,079,392 - +0.1 5,079,392 - +0.3 5,079,392 - -1.6 5,079,392 - -0.4 5,079,392 - -1.3 5,079,410 + -1.6 5,079,410 + -2.6 5,079,427 + +0.9 5,079,427 + -0.2 5,079,428 - +0.9 5,079,441 + -0.6 5,079,442 - +1.4 5,079,442 - +1.4 5,079,442 - +0.4 5,079,695 - +1.7
Or see this region's nucleotide sequence