Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5301.1 and Xcc-8004.5302.1 are separated by 354 nucleotides Xcc-8004.5302.1 and Xcc-8004.5303.1 overlap by 14 nucleotides
Xcc-8004.5301.1: Xcc-8004.5301.1 - hypothetical protein, at 5,043,221 to 5,043,934
Xcc-8004.5301.1
Xcc-8004.5302.1: Xcc-8004.5302.1 - FIG039767: hypothetical protein, at 5,044,289 to 5,044,996
Xcc-8004.5302.1
Xcc-8004.5303.1: Xcc-8004.5303.1 - FIG149030: hypothetical protein, at 5,044,983 to 5,046,452
Xcc-8004.5303.1
Position (kb) 5044
5045 Strain fitness (log2 ratio) -2
-1
0
1 at 5043.344 kb on + strand, within Xcc-8004.5301.1 at 5043.344 kb on + strand, within Xcc-8004.5301.1 at 5043.361 kb on + strand, within Xcc-8004.5301.1 at 5043.487 kb on - strand, within Xcc-8004.5301.1 at 5043.489 kb on + strand, within Xcc-8004.5301.1 at 5043.489 kb on + strand, within Xcc-8004.5301.1 at 5043.489 kb on + strand, within Xcc-8004.5301.1 at 5043.490 kb on - strand, within Xcc-8004.5301.1 at 5043.490 kb on - strand, within Xcc-8004.5301.1 at 5043.510 kb on + strand, within Xcc-8004.5301.1 at 5043.510 kb on + strand, within Xcc-8004.5301.1 at 5043.511 kb on - strand, within Xcc-8004.5301.1 at 5043.630 kb on + strand, within Xcc-8004.5301.1 at 5043.630 kb on + strand, within Xcc-8004.5301.1 at 5043.700 kb on + strand, within Xcc-8004.5301.1 at 5043.727 kb on - strand, within Xcc-8004.5301.1 at 5043.751 kb on - strand, within Xcc-8004.5301.1 at 5043.751 kb on - strand, within Xcc-8004.5301.1 at 5044.032 kb on - strand at 5044.218 kb on + strand at 5044.392 kb on + strand, within Xcc-8004.5302.1 at 5044.392 kb on + strand, within Xcc-8004.5302.1 at 5044.471 kb on + strand, within Xcc-8004.5302.1 at 5044.471 kb on + strand, within Xcc-8004.5302.1 at 5044.507 kb on - strand, within Xcc-8004.5302.1 at 5044.507 kb on - strand, within Xcc-8004.5302.1 at 5044.507 kb on - strand, within Xcc-8004.5302.1 at 5044.709 kb on + strand, within Xcc-8004.5302.1 at 5044.709 kb on + strand, within Xcc-8004.5302.1 at 5044.764 kb on - strand, within Xcc-8004.5302.1 at 5044.859 kb on - strand, within Xcc-8004.5302.1 at 5045.013 kb on - strand at 5045.125 kb on + strand at 5045.126 kb on - strand at 5045.308 kb on + strand, within Xcc-8004.5303.1 at 5045.494 kb on + strand, within Xcc-8004.5303.1 at 5045.495 kb on - strand, within Xcc-8004.5303.1 at 5045.525 kb on + strand, within Xcc-8004.5303.1 at 5045.525 kb on + strand, within Xcc-8004.5303.1 at 5045.994 kb on + strand, within Xcc-8004.5303.1 at 5045.994 kb on + strand, within Xcc-8004.5303.1 at 5045.994 kb on + strand, within Xcc-8004.5303.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,043,344 + Xcc-8004.5301.1 0.17 -1.2 5,043,344 + Xcc-8004.5301.1 0.17 -1.4 5,043,361 + Xcc-8004.5301.1 0.20 -1.3 5,043,487 - Xcc-8004.5301.1 0.37 -0.0 5,043,489 + Xcc-8004.5301.1 0.38 -0.5 5,043,489 + Xcc-8004.5301.1 0.38 +1.0 5,043,489 + Xcc-8004.5301.1 0.38 -1.1 5,043,490 - Xcc-8004.5301.1 0.38 -1.3 5,043,490 - Xcc-8004.5301.1 0.38 -0.5 5,043,510 + Xcc-8004.5301.1 0.40 +0.1 5,043,510 + Xcc-8004.5301.1 0.40 +0.4 5,043,511 - Xcc-8004.5301.1 0.41 -1.5 5,043,630 + Xcc-8004.5301.1 0.57 -0.2 5,043,630 + Xcc-8004.5301.1 0.57 -2.4 5,043,700 + Xcc-8004.5301.1 0.67 +0.0 5,043,727 - Xcc-8004.5301.1 0.71 +0.9 5,043,751 - Xcc-8004.5301.1 0.74 -0.4 5,043,751 - Xcc-8004.5301.1 0.74 +0.4 5,044,032 - -1.2 5,044,218 + +0.4 5,044,392 + Xcc-8004.5302.1 0.15 -0.3 5,044,392 + Xcc-8004.5302.1 0.15 -1.0 5,044,471 + Xcc-8004.5302.1 0.26 +0.7 5,044,471 + Xcc-8004.5302.1 0.26 -0.1 5,044,507 - Xcc-8004.5302.1 0.31 -1.4 5,044,507 - Xcc-8004.5302.1 0.31 -0.5 5,044,507 - Xcc-8004.5302.1 0.31 -0.6 5,044,709 + Xcc-8004.5302.1 0.59 -2.0 5,044,709 + Xcc-8004.5302.1 0.59 +0.0 5,044,764 - Xcc-8004.5302.1 0.67 +0.6 5,044,859 - Xcc-8004.5302.1 0.81 +0.9 5,045,013 - +0.1 5,045,125 + +0.6 5,045,126 - -0.5 5,045,308 + Xcc-8004.5303.1 0.22 -1.4 5,045,494 + Xcc-8004.5303.1 0.35 -2.1 5,045,495 - Xcc-8004.5303.1 0.35 -0.3 5,045,525 + Xcc-8004.5303.1 0.37 +0.7 5,045,525 + Xcc-8004.5303.1 0.37 -0.2 5,045,994 + Xcc-8004.5303.1 0.69 +1.1 5,045,994 + Xcc-8004.5303.1 0.69 -0.1 5,045,994 + Xcc-8004.5303.1 0.69 -2.6
Or see this region's nucleotide sequence