Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5286.1 and Xcc-8004.5288.1 are separated by 311 nucleotides
Xcc-8004.5286.1: Xcc-8004.5286.1 - Benzoate transport protein, at 5,025,683 to 5,026,867
Xcc-8004.5286.1
Xcc-8004.5288.1: Xcc-8004.5288.1 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 5,027,179 to 5,029,083
Xcc-8004.5288.1
Position (kb) 5025
5026
5027 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5025.325 kb on + strand at 5025.433 kb on - strand at 5025.484 kb on - strand at 5025.484 kb on - strand at 5025.484 kb on - strand at 5025.502 kb on + strand at 5025.502 kb on + strand at 5025.503 kb on - strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.523 kb on - strand at 5025.523 kb on - strand at 5025.550 kb on + strand at 5025.550 kb on + strand at 5025.550 kb on + strand at 5025.550 kb on + strand at 5025.551 kb on - strand at 5025.551 kb on - strand at 5025.551 kb on - strand at 5025.602 kb on + strand at 5025.602 kb on + strand at 5025.602 kb on + strand at 5025.603 kb on - strand at 5025.603 kb on - strand at 5025.608 kb on + strand at 5025.621 kb on + strand at 5025.621 kb on + strand at 5025.621 kb on + strand at 5025.622 kb on - strand at 5025.622 kb on - strand at 5025.622 kb on - strand at 5025.651 kb on + strand at 5025.652 kb on - strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.199 kb on + strand, within Xcc-8004.5286.1 at 5026.200 kb on - strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.413 kb on - strand, within Xcc-8004.5286.1 at 5026.414 kb on + strand, within Xcc-8004.5286.1 at 5026.414 kb on + strand, within Xcc-8004.5286.1 at 5026.414 kb on + strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.459 kb on + strand, within Xcc-8004.5286.1 at 5026.460 kb on - strand, within Xcc-8004.5286.1 at 5026.460 kb on - strand, within Xcc-8004.5286.1 at 5026.485 kb on - strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.933 kb on + strand at 5026.933 kb on + strand at 5026.934 kb on - strand at 5026.934 kb on - strand at 5026.934 kb on - strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.067 kb on + strand at 5027.067 kb on + strand at 5027.068 kb on - strand at 5027.068 kb on - strand at 5027.068 kb on - strand at 5027.180 kb on + strand at 5027.180 kb on + strand at 5027.180 kb on + strand at 5027.181 kb on - strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.201 kb on - strand at 5027.201 kb on - strand at 5027.261 kb on + strand at 5027.261 kb on + strand at 5027.262 kb on - strand at 5027.262 kb on - strand at 5027.262 kb on - strand at 5027.303 kb on + strand at 5027.303 kb on + strand at 5027.303 kb on + strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.372 kb on + strand, within Xcc-8004.5288.1 at 5027.372 kb on + strand, within Xcc-8004.5288.1 at 5027.372 kb on + strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.765 kb on - strand, within Xcc-8004.5288.1 at 5027.765 kb on - strand, within Xcc-8004.5288.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 5,025,325 + +0.1 5,025,433 - -1.5 5,025,484 - -0.4 5,025,484 - +0.7 5,025,484 - -0.5 5,025,502 + +1.3 5,025,502 + -0.8 5,025,503 - +0.3 5,025,522 + -0.2 5,025,522 + +1.0 5,025,522 + +0.6 5,025,522 + -0.5 5,025,522 + -0.2 5,025,522 + -0.3 5,025,523 - +0.8 5,025,523 - +0.5 5,025,550 + -1.2 5,025,550 + +1.0 5,025,550 + -0.5 5,025,550 + +0.5 5,025,551 - -0.1 5,025,551 - +0.4 5,025,551 - +0.1 5,025,602 + -1.2 5,025,602 + +0.2 5,025,602 + +1.3 5,025,603 - +0.8 5,025,603 - -0.2 5,025,608 + +0.2 5,025,621 + +1.0 5,025,621 + +1.1 5,025,621 + -1.0 5,025,622 - -0.8 5,025,622 - +1.1 5,025,622 - -1.0 5,025,651 + -0.5 5,025,652 - -0.9 5,025,750 + -0.3 5,025,750 + -0.3 5,025,750 + +0.6 5,025,750 + +0.8 5,025,750 + -0.4 5,025,750 + -0.0 5,025,750 + -0.1 5,025,750 + -0.3 5,025,750 + +0.6 5,025,750 + +0.3 5,025,750 + -1.2 5,025,750 + +1.1 5,025,750 + -0.3 5,025,750 + +1.5 5,025,750 + -1.3 5,025,750 + -0.6 5,025,750 + -0.4 5,025,750 + +0.1 5,025,750 + +0.4 5,025,751 - +0.9 5,025,751 - +0.1 5,025,751 - +0.7 5,025,751 - +1.1 5,025,751 - +1.0 5,025,751 - -2.1 5,025,751 - -0.0 5,025,751 - +0.4 5,025,751 - -0.2 5,025,751 - -0.1 5,025,751 - +1.3 5,025,751 - +1.9 5,026,169 + Xcc-8004.5286.1 0.41 -0.3 5,026,169 + Xcc-8004.5286.1 0.41 -0.1 5,026,169 + Xcc-8004.5286.1 0.41 +2.7 5,026,169 + Xcc-8004.5286.1 0.41 +1.1 5,026,169 + Xcc-8004.5286.1 0.41 +0.7 5,026,169 + Xcc-8004.5286.1 0.41 +1.5 5,026,169 + Xcc-8004.5286.1 0.41 -0.8 5,026,169 + Xcc-8004.5286.1 0.41 +0.4 5,026,169 + Xcc-8004.5286.1 0.41 +0.3 5,026,169 + Xcc-8004.5286.1 0.41 +0.4 5,026,169 + Xcc-8004.5286.1 0.41 -0.1 5,026,169 + Xcc-8004.5286.1 0.41 -1.3 5,026,170 - Xcc-8004.5286.1 0.41 +0.9 5,026,170 - Xcc-8004.5286.1 0.41 +0.5 5,026,170 - Xcc-8004.5286.1 0.41 +0.4 5,026,170 - Xcc-8004.5286.1 0.41 +0.6 5,026,170 - Xcc-8004.5286.1 0.41 +0.0 5,026,170 - Xcc-8004.5286.1 0.41 +0.5 5,026,170 - Xcc-8004.5286.1 0.41 -0.3 5,026,170 - Xcc-8004.5286.1 0.41 -0.3 5,026,170 - Xcc-8004.5286.1 0.41 -1.7 5,026,170 - Xcc-8004.5286.1 0.41 -0.4 5,026,170 - Xcc-8004.5286.1 0.41 -0.2 5,026,170 - Xcc-8004.5286.1 0.41 +0.9 5,026,170 - Xcc-8004.5286.1 0.41 +1.0 5,026,199 + Xcc-8004.5286.1 0.44 +0.7 5,026,200 - Xcc-8004.5286.1 0.44 +0.5 5,026,350 + Xcc-8004.5286.1 0.56 -1.1 5,026,350 + Xcc-8004.5286.1 0.56 -1.3 5,026,350 + Xcc-8004.5286.1 0.56 +0.4 5,026,350 + Xcc-8004.5286.1 0.56 -1.1 5,026,350 + Xcc-8004.5286.1 0.56 +0.2 5,026,350 + Xcc-8004.5286.1 0.56 -0.6 5,026,351 - Xcc-8004.5286.1 0.56 -0.2 5,026,351 - Xcc-8004.5286.1 0.56 -1.0 5,026,351 - Xcc-8004.5286.1 0.56 +0.8 5,026,351 - Xcc-8004.5286.1 0.56 -0.7 5,026,351 - Xcc-8004.5286.1 0.56 +0.1 5,026,351 - Xcc-8004.5286.1 0.56 -0.8 5,026,413 - Xcc-8004.5286.1 0.62 +0.9 5,026,414 + Xcc-8004.5286.1 0.62 -0.3 5,026,414 + Xcc-8004.5286.1 0.62 +0.6 5,026,414 + Xcc-8004.5286.1 0.62 +0.7 5,026,415 - Xcc-8004.5286.1 0.62 +0.0 5,026,415 - Xcc-8004.5286.1 0.62 +0.9 5,026,415 - Xcc-8004.5286.1 0.62 -1.1 5,026,415 - Xcc-8004.5286.1 0.62 +1.2 5,026,415 - Xcc-8004.5286.1 0.62 -0.6 5,026,415 - Xcc-8004.5286.1 0.62 +0.5 5,026,415 - Xcc-8004.5286.1 0.62 +0.1 5,026,415 - Xcc-8004.5286.1 0.62 +4.3 5,026,415 - Xcc-8004.5286.1 0.62 +0.0 5,026,415 - Xcc-8004.5286.1 0.62 -0.1 5,026,459 + Xcc-8004.5286.1 0.65 -2.0 5,026,460 - Xcc-8004.5286.1 0.66 +0.7 5,026,460 - Xcc-8004.5286.1 0.66 -1.1 5,026,485 - Xcc-8004.5286.1 0.68 +1.0 5,026,589 + Xcc-8004.5286.1 0.76 -0.4 5,026,589 + Xcc-8004.5286.1 0.76 -0.4 5,026,589 + Xcc-8004.5286.1 0.76 -2.0 5,026,589 + Xcc-8004.5286.1 0.76 +1.6 5,026,589 + Xcc-8004.5286.1 0.76 -1.7 5,026,589 + Xcc-8004.5286.1 0.76 +0.9 5,026,589 + Xcc-8004.5286.1 0.76 -1.8 5,026,589 + Xcc-8004.5286.1 0.76 -0.2 5,026,589 + Xcc-8004.5286.1 0.76 +0.9 5,026,589 + Xcc-8004.5286.1 0.76 +1.4 5,026,589 + Xcc-8004.5286.1 0.76 -0.2 5,026,589 + Xcc-8004.5286.1 0.76 +1.0 5,026,589 + Xcc-8004.5286.1 0.76 +1.2 5,026,589 + Xcc-8004.5286.1 0.76 -0.4 5,026,589 + Xcc-8004.5286.1 0.76 +0.8 5,026,589 + Xcc-8004.5286.1 0.76 -1.3 5,026,589 + Xcc-8004.5286.1 0.76 +0.1 5,026,589 + Xcc-8004.5286.1 0.76 +0.7 5,026,589 + Xcc-8004.5286.1 0.76 +1.2 5,026,589 + Xcc-8004.5286.1 0.76 +0.9 5,026,589 + Xcc-8004.5286.1 0.76 +1.0 5,026,589 + Xcc-8004.5286.1 0.76 -0.2 5,026,590 - Xcc-8004.5286.1 0.77 +1.9 5,026,590 - Xcc-8004.5286.1 0.77 +1.7 5,026,590 - Xcc-8004.5286.1 0.77 +0.4 5,026,590 - Xcc-8004.5286.1 0.77 -0.3 5,026,590 - Xcc-8004.5286.1 0.77 -0.3 5,026,590 - Xcc-8004.5286.1 0.77 -1.6 5,026,590 - Xcc-8004.5286.1 0.77 +0.8 5,026,590 - Xcc-8004.5286.1 0.77 +0.2 5,026,590 - Xcc-8004.5286.1 0.77 +0.8 5,026,590 - Xcc-8004.5286.1 0.77 +1.0 5,026,590 - Xcc-8004.5286.1 0.77 -1.3 5,026,590 - Xcc-8004.5286.1 0.77 -0.1 5,026,590 - Xcc-8004.5286.1 0.77 -1.3 5,026,590 - Xcc-8004.5286.1 0.77 +0.8 5,026,933 + -0.3 5,026,933 + -0.9 5,026,934 - +1.1 5,026,934 - +0.1 5,026,934 - -0.1 5,027,048 + +0.3 5,027,048 + +0.7 5,027,048 + -1.4 5,027,048 + -0.8 5,027,048 + -1.5 5,027,049 - -1.1 5,027,049 - +0.9 5,027,049 - -0.6 5,027,049 - -0.3 5,027,049 - -2.6 5,027,049 - -1.2 5,027,049 - +0.8 5,027,049 - +0.2 5,027,060 + -0.2 5,027,060 + +1.2 5,027,060 + -0.5 5,027,060 + -0.3 5,027,060 + +0.9 5,027,060 + -0.3 5,027,061 - +0.8 5,027,061 - -0.3 5,027,061 - +1.8 5,027,061 - +1.4 5,027,061 - -1.3 5,027,067 + +0.3 5,027,067 + +0.2 5,027,068 - -0.3 5,027,068 - +0.8 5,027,068 - -0.5 5,027,180 + +0.0 5,027,180 + -0.1 5,027,180 + +1.0 5,027,181 - -1.2 5,027,200 + +1.7 5,027,200 + -1.1 5,027,200 + -0.3 5,027,200 + +0.0 5,027,200 + -0.7 5,027,201 - +1.9 5,027,201 - +0.1 5,027,261 + -1.6 5,027,261 + +0.4 5,027,262 - -0.4 5,027,262 - -0.1 5,027,262 - -1.3 5,027,303 + +0.7 5,027,303 + -2.5 5,027,303 + -0.4 5,027,304 - +0.7 5,027,304 - +0.1 5,027,304 - -0.6 5,027,304 - -1.6 5,027,304 - -1.2 5,027,372 + Xcc-8004.5288.1 0.10 -0.1 5,027,372 + Xcc-8004.5288.1 0.10 -0.9 5,027,372 + Xcc-8004.5288.1 0.10 +0.3 5,027,373 - Xcc-8004.5288.1 0.10 -1.2 5,027,373 - Xcc-8004.5288.1 0.10 -0.4 5,027,373 - Xcc-8004.5288.1 0.10 +0.3 5,027,373 - Xcc-8004.5288.1 0.10 -0.6 5,027,373 - Xcc-8004.5288.1 0.10 +1.4 5,027,764 + Xcc-8004.5288.1 0.31 +0.3 5,027,764 + Xcc-8004.5288.1 0.31 +1.5 5,027,764 + Xcc-8004.5288.1 0.31 +0.8 5,027,764 + Xcc-8004.5288.1 0.31 +0.8 5,027,765 - Xcc-8004.5288.1 0.31 -1.3 5,027,765 - Xcc-8004.5288.1 0.31 -0.3
Or see this region's nucleotide sequence