Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5233.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,967,329	-				-0.1
4,967,391	+				+0.9
4,967,443	+				+0.7
4,967,470	+				-0.2
4,967,471	-				+1.2
4,967,477	-				+0.4
4,967,538	+				+1.1
4,967,538	+				-1.1
4,967,538	+				-0.5
4,967,539	-				-1.6
4,967,539	-				-0.8
4,967,539	-				+1.3
4,967,539	-				-0.7
4,967,565	+				-0.1
4,967,565	+				-1.2
4,967,566	-				-0.3
4,967,566	-				-0.8
4,967,613	+				-2.3
4,967,613	+				-1.7
4,967,614	-				-0.7
4,967,614	-				+1.2
4,967,614	-				-0.5
4,967,617	+				+0.1
4,967,618	-				-1.0
4,967,618	-				-1.2
4,967,618	-				+0.2
4,967,618	-				-0.9
4,967,619	+				-2.3
4,967,620	-				+0.8
4,967,620	-				+0.7
4,967,674	-				+0.6
4,967,695	+				+0.6
4,967,695	+				-0.4
4,967,695	+				+0.6
4,967,696	-				+0.1
4,967,696	-				+0.5
4,967,696	-				+0.7
4,967,696	-				-0.3
4,967,696	-				+0.6
4,967,696	-				-0.1
4,967,700	+				+1.2
4,967,727	+				-1.6
4,967,894	-		Xcc-8004.5231.1	0.60	+0.5
4,967,927	-		Xcc-8004.5231.1	0.74	+1.2
4,967,927	-		Xcc-8004.5231.1	0.74	-0.3
4,967,937	+		Xcc-8004.5231.1	0.79	-1.7
4,967,946	-		Xcc-8004.5231.1	0.82	-0.2
4,967,975	+				-0.2
4,967,975	+				+0.1
4,968,091	+		Xcc-8004.5232.1	0.34	-0.9
4,968,092	-		Xcc-8004.5232.1	0.34	+0.6
4,968,092	-		Xcc-8004.5232.1	0.34	+0.9
4,968,098	+		Xcc-8004.5232.1	0.36	-0.3
4,968,098	+		Xcc-8004.5232.1	0.36	+0.4
4,968,099	-		Xcc-8004.5232.1	0.36	+0.9
4,968,230	+		Xcc-8004.5232.1	0.76	+0.0
4,968,230	+		Xcc-8004.5232.1	0.76	-0.5
4,968,230	+		Xcc-8004.5232.1	0.76	-0.6
4,968,236	-		Xcc-8004.5232.1	0.78	+0.2
4,968,244	+		Xcc-8004.5232.1	0.80	-0.6
4,968,288	+				-0.0
4,968,288	+				+0.9
4,968,288	+				-0.5
4,968,289	-				-1.5
4,968,289	-				-2.3
4,968,290	+				-0.1
4,968,291	-				+0.3
4,968,312	+				-0.2
4,968,312	+				+0.5
4,968,312	+				+0.0
4,968,313	-				-0.6
4,968,313	-				+0.3
4,968,313	-				+0.5
4,968,400	+		Xcc-8004.5233.1	0.14	+1.2
4,968,400	+		Xcc-8004.5233.1	0.14	+0.6
4,968,401	-		Xcc-8004.5233.1	0.14	-0.4
4,968,410	+		Xcc-8004.5233.1	0.15	+1.2
4,968,412	+		Xcc-8004.5233.1	0.15	+1.4
4,968,412	+		Xcc-8004.5233.1	0.15	+1.2
4,968,452	+		Xcc-8004.5233.1	0.19	-0.1
4,968,480	+		Xcc-8004.5233.1	0.22	-0.1
4,968,480	+		Xcc-8004.5233.1	0.22	+0.4
4,968,480	+		Xcc-8004.5233.1	0.22	-0.8
4,968,480	+		Xcc-8004.5233.1	0.22	+1.1
4,968,480	+		Xcc-8004.5233.1	0.22	+0.8
4,968,481	-		Xcc-8004.5233.1	0.22	+0.8
4,968,481	-		Xcc-8004.5233.1	0.22	-0.9
4,968,582	+		Xcc-8004.5233.1	0.33	-0.5
4,968,599	+		Xcc-8004.5233.1	0.35	-0.1
4,968,600	-		Xcc-8004.5233.1	0.35	+1.7
4,968,631	+		Xcc-8004.5233.1	0.38	+0.0
4,968,631	+		Xcc-8004.5233.1	0.38	+1.0
4,968,665	+		Xcc-8004.5233.1	0.42	+0.4
4,968,666	-		Xcc-8004.5233.1	0.42	+0.9
4,968,678	+		Xcc-8004.5233.1	0.43	+0.3
4,968,678	+		Xcc-8004.5233.1	0.43	+0.2
4,968,678	+		Xcc-8004.5233.1	0.43	-0.5
4,968,678	+		Xcc-8004.5233.1	0.43	+1.0
4,968,678	+		Xcc-8004.5233.1	0.43	-0.1
4,968,678	+		Xcc-8004.5233.1	0.43	-0.6
4,968,679	-		Xcc-8004.5233.1	0.43	+0.8
4,968,679	-		Xcc-8004.5233.1	0.43	+0.0
4,968,679	-		Xcc-8004.5233.1	0.43	+1.4
4,968,679	-		Xcc-8004.5233.1	0.43	+0.9
4,968,731	+		Xcc-8004.5233.1	0.48	+0.4
4,968,731	+		Xcc-8004.5233.1	0.48	+1.2
4,968,735	+		Xcc-8004.5233.1	0.49	-1.3
4,968,736	-		Xcc-8004.5233.1	0.49	+0.3
4,968,741	+		Xcc-8004.5233.1	0.50	+1.2
4,968,903	+		Xcc-8004.5233.1	0.66	-0.7
4,968,980	-		Xcc-8004.5233.1	0.75	+1.2
4,969,062	+		Xcc-8004.5233.1	0.83	-1.5
4,969,135	+				-0.3
4,969,135	+				-2.1
4,969,135	+				-1.0
4,969,138	+				-0.3
4,969,138	+				-0.5
4,969,138	+				-0.4
4,969,221	+				-0.7
4,969,237	+				+0.3
4,969,261	-				-0.5
4,969,492	+		Xcc-8004.5235.1	0.18	+0.5
4,969,503	+		Xcc-8004.5235.1	0.19	+0.0
4,969,504	-		Xcc-8004.5235.1	0.19	-0.6
4,969,504	-		Xcc-8004.5235.1	0.19	-1.6
4,969,504	-		Xcc-8004.5235.1	0.19	+0.1
4,969,681	+		Xcc-8004.5235.1	0.34	-1.3
4,969,681	+		Xcc-8004.5235.1	0.34	+1.2
4,969,682	-		Xcc-8004.5235.1	0.34	-0.3
4,969,721	-		Xcc-8004.5235.1	0.37	+1.7
4,969,844	-		Xcc-8004.5235.1	0.48	+0.4
4,969,844	-		Xcc-8004.5235.1	0.48	+1.5
4,969,844	-		Xcc-8004.5235.1	0.48	+0.5
4,969,846	+		Xcc-8004.5235.1	0.48	-0.0
4,969,846	+		Xcc-8004.5235.1	0.48	+0.7
4,969,847	-		Xcc-8004.5235.1	0.48	+0.4
4,969,847	-		Xcc-8004.5235.1	0.48	+0.7
4,969,847	-		Xcc-8004.5235.1	0.48	-0.1
4,969,868	-		Xcc-8004.5235.1	0.50	-1.1
4,969,945	+		Xcc-8004.5235.1	0.56	+1.5
4,970,006	-		Xcc-8004.5235.1	0.61	+0.2
4,970,126	+		Xcc-8004.5235.1	0.71	-0.1
4,970,126	+		Xcc-8004.5235.1	0.71	-0.4
4,970,126	+		Xcc-8004.5235.1	0.71	-1.6
4,970,127	-		Xcc-8004.5235.1	0.71	-0.6
4,970,127	-		Xcc-8004.5235.1	0.71	+0.1