Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5106.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,842,098	-		Xcc-8004.5105.1	0.71	+1.7
4,842,695	-				+1.7
4,842,886	-				+0.7
4,842,907	+				+0.7
4,842,907	+				+1.0
4,842,908	-				-0.0
4,842,908	-				-0.6
4,842,943	-				+1.5
4,843,109	+		Xcc-8004.5106.1	0.48	-0.7
4,843,166	+		Xcc-8004.5106.1	0.68	-0.9
4,843,166	+		Xcc-8004.5106.1	0.68	+2.4
4,843,166	+		Xcc-8004.5106.1	0.68	+0.2
4,843,166	+		Xcc-8004.5106.1	0.68	+1.8
4,843,166	+		Xcc-8004.5106.1	0.68	+1.6
4,843,166	+		Xcc-8004.5106.1	0.68	-1.2
4,843,167	-		Xcc-8004.5106.1	0.68	+0.4
4,843,167	-		Xcc-8004.5106.1	0.68	-0.5
4,843,167	-		Xcc-8004.5106.1	0.68	-0.4
4,843,167	-		Xcc-8004.5106.1	0.68	-0.9
4,843,175	+		Xcc-8004.5106.1	0.71	+1.3
4,843,175	+		Xcc-8004.5106.1	0.71	+0.2
4,843,176	-		Xcc-8004.5106.1	0.72	-0.4
4,843,199	-		Xcc-8004.5106.1	0.80	+0.0
4,843,199	-		Xcc-8004.5106.1	0.80	-1.1
4,843,199	-		Xcc-8004.5106.1	0.80	+0.9
4,843,232	+				+0.4
4,843,232	+				+1.2
4,843,232	+				+1.3
4,843,233	-				-0.2
4,843,233	-				+0.8
4,843,233	-				+0.6
4,843,233	-				-1.4
4,843,233	-				+0.5
4,843,233	-				-1.0
4,843,233	-				-1.5
4,843,244	+				+1.3
4,843,244	+				-1.9
4,843,244	+				+1.3
4,843,244	+				+0.4
4,843,244	+				-0.8
4,843,244	+				-0.8
4,843,244	+				-1.4
4,843,244	+				-0.3
4,843,244	+				+1.4
4,843,244	+				-0.1
4,843,244	+				-0.4
4,843,244	+				-1.4
4,843,244	+				+0.3
4,843,244	+				-0.0
4,843,244	+				-0.6
4,843,244	+				+0.1
4,843,244	+				-2.0
4,843,244	+				+1.2
4,843,244	+				+1.4
4,843,244	+				+0.6
4,843,244	+				-2.9
4,843,244	+				-0.9
4,843,244	+				+1.1
4,843,244	+				-0.3
4,843,245	-				-0.0
4,843,245	-				-1.1
4,843,245	-				-0.2
4,843,245	-				-0.0
4,843,245	-				+0.2
4,843,245	-				-2.8
4,843,245	-				-0.2
4,843,245	-				+1.4
4,843,245	-				-1.9
4,843,245	-				-2.3
4,843,245	-				+0.7
4,843,245	-				+1.0
4,843,245	-				+0.5
4,843,245	-				-1.6
4,843,245	-				-0.9
4,843,246	+				+0.7
4,843,246	+				-1.6
4,843,246	+				+0.3
4,843,246	+				+0.1
4,843,246	+				+0.2
4,843,246	+				-1.9
4,843,247	-				-2.3
4,843,247	-				-0.8
4,843,247	-				-0.8
4,843,247	-				-1.8
4,843,247	-				+1.1
4,843,247	-				+0.4
4,843,296	+				+0.3
4,843,366	+				+2.2
4,843,366	+				+1.0
4,843,366	+				+0.6
4,843,366	+				+0.1
4,843,367	-				+2.2
4,843,367	-				+0.7
4,843,367	-				-0.5
4,843,367	-				-1.6
4,843,367	-				+0.6
4,843,367	-				-0.3
4,843,367	-				+0.3
4,843,507	+				-1.2
4,843,675	+		Xcc-8004.5108.1	0.11	-0.8
4,843,675	+		Xcc-8004.5108.1	0.11	-0.5
4,843,676	-		Xcc-8004.5108.1	0.11	-0.4
4,843,676	-		Xcc-8004.5108.1	0.11	-0.1
4,843,678	+		Xcc-8004.5108.1	0.11	+0.6
4,843,678	+		Xcc-8004.5108.1	0.11	-1.8
4,843,678	+		Xcc-8004.5108.1	0.11	+0.9
4,843,678	+		Xcc-8004.5108.1	0.11	+0.9
4,843,679	-		Xcc-8004.5108.1	0.12	-0.9