Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4929.1 and Xcc-8004.4930.1 are separated by 57 nucleotides Xcc-8004.4930.1 and Xcc-8004.4931.1 are separated by 68 nucleotides
Xcc-8004.4929.1: Xcc-8004.4929.1 - hypothetical protein, at 4,686,556 to 4,687,677
Xcc-8004.4929.1
Xcc-8004.4930.1: Xcc-8004.4930.1 - RNA-2',3'-PO4:RNA-5'-OH ligase, at 4,687,735 to 4,688,955
Xcc-8004.4930.1
Xcc-8004.4931.1: Xcc-8004.4931.1 - FIG01210460: hypothetical protein, at 4,689,024 to 4,689,953
Xcc-8004.4931.1
Position (kb) 4687
4688
4689 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4686.840 kb on - strand, within Xcc-8004.4929.1 at 4686.840 kb on - strand, within Xcc-8004.4929.1 at 4686.865 kb on + strand, within Xcc-8004.4929.1 at 4687.271 kb on - strand, within Xcc-8004.4929.1 at 4687.362 kb on + strand, within Xcc-8004.4929.1 at 4687.362 kb on + strand, within Xcc-8004.4929.1 at 4687.363 kb on - strand, within Xcc-8004.4929.1 at 4687.363 kb on - strand, within Xcc-8004.4929.1 at 4687.363 kb on - strand, within Xcc-8004.4929.1 at 4687.750 kb on + strand at 4687.750 kb on + strand at 4687.857 kb on - strand, within Xcc-8004.4930.1 at 4688.103 kb on + strand, within Xcc-8004.4930.1 at 4688.194 kb on - strand, within Xcc-8004.4930.1 at 4688.329 kb on + strand, within Xcc-8004.4930.1 at 4688.329 kb on + strand, within Xcc-8004.4930.1 at 4688.329 kb on + strand, within Xcc-8004.4930.1 at 4688.330 kb on - strand, within Xcc-8004.4930.1 at 4688.330 kb on - strand, within Xcc-8004.4930.1 at 4688.330 kb on - strand, within Xcc-8004.4930.1 at 4688.330 kb on - strand, within Xcc-8004.4930.1 at 4688.330 kb on - strand, within Xcc-8004.4930.1 at 4688.330 kb on - strand, within Xcc-8004.4930.1 at 4688.437 kb on + strand, within Xcc-8004.4930.1 at 4688.438 kb on - strand, within Xcc-8004.4930.1 at 4688.438 kb on - strand, within Xcc-8004.4930.1 at 4688.438 kb on - strand, within Xcc-8004.4930.1 at 4688.438 kb on - strand, within Xcc-8004.4930.1 at 4688.438 kb on - strand, within Xcc-8004.4930.1 at 4688.438 kb on - strand, within Xcc-8004.4930.1 at 4688.467 kb on + strand, within Xcc-8004.4930.1 at 4688.468 kb on - strand, within Xcc-8004.4930.1 at 4688.575 kb on + strand, within Xcc-8004.4930.1 at 4688.575 kb on + strand, within Xcc-8004.4930.1 at 4688.575 kb on + strand, within Xcc-8004.4930.1 at 4688.575 kb on + strand, within Xcc-8004.4930.1 at 4688.575 kb on + strand, within Xcc-8004.4930.1 at 4688.575 kb on + strand, within Xcc-8004.4930.1 at 4688.576 kb on - strand, within Xcc-8004.4930.1 at 4688.576 kb on - strand, within Xcc-8004.4930.1 at 4688.576 kb on - strand, within Xcc-8004.4930.1 at 4688.576 kb on - strand, within Xcc-8004.4930.1 at 4688.680 kb on - strand, within Xcc-8004.4930.1 at 4688.685 kb on + strand, within Xcc-8004.4930.1 at 4688.685 kb on + strand, within Xcc-8004.4930.1 at 4688.685 kb on + strand, within Xcc-8004.4930.1 at 4688.686 kb on - strand, within Xcc-8004.4930.1 at 4688.686 kb on - strand, within Xcc-8004.4930.1 at 4688.686 kb on - strand, within Xcc-8004.4930.1 at 4688.686 kb on - strand, within Xcc-8004.4930.1 at 4688.689 kb on + strand, within Xcc-8004.4930.1 at 4688.689 kb on + strand, within Xcc-8004.4930.1 at 4688.689 kb on + strand, within Xcc-8004.4930.1 at 4688.689 kb on + strand, within Xcc-8004.4930.1 at 4688.689 kb on + strand, within Xcc-8004.4930.1 at 4688.689 kb on + strand, within Xcc-8004.4930.1 at 4688.689 kb on + strand, within Xcc-8004.4930.1 at 4688.690 kb on - strand, within Xcc-8004.4930.1 at 4688.690 kb on - strand, within Xcc-8004.4930.1 at 4688.690 kb on - strand, within Xcc-8004.4930.1 at 4688.866 kb on + strand at 4688.866 kb on + strand at 4688.866 kb on + strand at 4688.866 kb on + strand at 4688.866 kb on + strand at 4689.120 kb on + strand, within Xcc-8004.4931.1 at 4689.165 kb on + strand, within Xcc-8004.4931.1 at 4689.165 kb on + strand, within Xcc-8004.4931.1 at 4689.165 kb on + strand, within Xcc-8004.4931.1 at 4689.165 kb on + strand, within Xcc-8004.4931.1 at 4689.165 kb on + strand, within Xcc-8004.4931.1 at 4689.165 kb on + strand, within Xcc-8004.4931.1 at 4689.165 kb on + strand, within Xcc-8004.4931.1 at 4689.166 kb on - strand, within Xcc-8004.4931.1 at 4689.166 kb on - strand, within Xcc-8004.4931.1 at 4689.166 kb on - strand, within Xcc-8004.4931.1 at 4689.166 kb on - strand, within Xcc-8004.4931.1 at 4689.166 kb on - strand, within Xcc-8004.4931.1 at 4689.166 kb on - strand, within Xcc-8004.4931.1 at 4689.389 kb on - strand, within Xcc-8004.4931.1 at 4689.412 kb on - strand, within Xcc-8004.4931.1 at 4689.441 kb on + strand, within Xcc-8004.4931.1 at 4689.441 kb on + strand, within Xcc-8004.4931.1 at 4689.442 kb on - strand, within Xcc-8004.4931.1 at 4689.442 kb on - strand, within Xcc-8004.4931.1 at 4689.444 kb on + strand, within Xcc-8004.4931.1 at 4689.444 kb on + strand, within Xcc-8004.4931.1 at 4689.444 kb on + strand, within Xcc-8004.4931.1 at 4689.444 kb on + strand, within Xcc-8004.4931.1 at 4689.444 kb on + strand, within Xcc-8004.4931.1 at 4689.444 kb on + strand, within Xcc-8004.4931.1 at 4689.444 kb on + strand, within Xcc-8004.4931.1 at 4689.445 kb on - strand, within Xcc-8004.4931.1 at 4689.445 kb on - strand, within Xcc-8004.4931.1 at 4689.445 kb on - strand, within Xcc-8004.4931.1 at 4689.445 kb on - strand, within Xcc-8004.4931.1 at 4689.445 kb on - strand, within Xcc-8004.4931.1 at 4689.445 kb on - strand, within Xcc-8004.4931.1 at 4689.445 kb on - strand, within Xcc-8004.4931.1 at 4689.462 kb on + strand, within Xcc-8004.4931.1 at 4689.462 kb on + strand, within Xcc-8004.4931.1 at 4689.463 kb on - strand, within Xcc-8004.4931.1 at 4689.463 kb on - strand, within Xcc-8004.4931.1 at 4689.474 kb on + strand, within Xcc-8004.4931.1 at 4689.474 kb on + strand, within Xcc-8004.4931.1 at 4689.487 kb on - strand, within Xcc-8004.4931.1 at 4689.660 kb on + strand, within Xcc-8004.4931.1 at 4689.660 kb on + strand, within Xcc-8004.4931.1 at 4689.681 kb on + strand, within Xcc-8004.4931.1 at 4689.723 kb on + strand, within Xcc-8004.4931.1 at 4689.723 kb on + strand, within Xcc-8004.4931.1 at 4689.723 kb on + strand, within Xcc-8004.4931.1 at 4689.724 kb on - strand, within Xcc-8004.4931.1 at 4689.724 kb on - strand, within Xcc-8004.4931.1 at 4689.724 kb on - strand, within Xcc-8004.4931.1 at 4689.729 kb on + strand, within Xcc-8004.4931.1 at 4689.729 kb on + strand, within Xcc-8004.4931.1 at 4689.729 kb on + strand, within Xcc-8004.4931.1 at 4689.729 kb on + strand, within Xcc-8004.4931.1 at 4689.730 kb on - strand, within Xcc-8004.4931.1 at 4689.730 kb on - strand, within Xcc-8004.4931.1 at 4689.739 kb on - strand, within Xcc-8004.4931.1 at 4689.750 kb on + strand, within Xcc-8004.4931.1 at 4689.751 kb on - strand, within Xcc-8004.4931.1 at 4689.952 kb on - strand at 4689.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,686,840 - Xcc-8004.4929.1 0.25 -2.2 4,686,840 - Xcc-8004.4929.1 0.25 +0.5 4,686,865 + Xcc-8004.4929.1 0.28 -1.1 4,687,271 - Xcc-8004.4929.1 0.64 -1.9 4,687,362 + Xcc-8004.4929.1 0.72 -0.6 4,687,362 + Xcc-8004.4929.1 0.72 -0.2 4,687,363 - Xcc-8004.4929.1 0.72 +1.3 4,687,363 - Xcc-8004.4929.1 0.72 +1.4 4,687,363 - Xcc-8004.4929.1 0.72 +1.5 4,687,750 + +0.5 4,687,750 + -0.1 4,687,857 - Xcc-8004.4930.1 0.10 +0.7 4,688,103 + Xcc-8004.4930.1 0.30 +0.5 4,688,194 - Xcc-8004.4930.1 0.38 -0.8 4,688,329 + Xcc-8004.4930.1 0.49 -1.1 4,688,329 + Xcc-8004.4930.1 0.49 +1.1 4,688,329 + Xcc-8004.4930.1 0.49 -0.9 4,688,330 - Xcc-8004.4930.1 0.49 +0.4 4,688,330 - Xcc-8004.4930.1 0.49 -0.2 4,688,330 - Xcc-8004.4930.1 0.49 +1.9 4,688,330 - Xcc-8004.4930.1 0.49 +1.8 4,688,330 - Xcc-8004.4930.1 0.49 +0.1 4,688,330 - Xcc-8004.4930.1 0.49 -0.3 4,688,437 + Xcc-8004.4930.1 0.57 -0.3 4,688,438 - Xcc-8004.4930.1 0.58 -2.0 4,688,438 - Xcc-8004.4930.1 0.58 +0.1 4,688,438 - Xcc-8004.4930.1 0.58 +0.7 4,688,438 - Xcc-8004.4930.1 0.58 -1.5 4,688,438 - Xcc-8004.4930.1 0.58 -0.4 4,688,438 - Xcc-8004.4930.1 0.58 +1.5 4,688,467 + Xcc-8004.4930.1 0.60 -0.4 4,688,468 - Xcc-8004.4930.1 0.60 +0.4 4,688,575 + Xcc-8004.4930.1 0.69 +0.2 4,688,575 + Xcc-8004.4930.1 0.69 -0.6 4,688,575 + Xcc-8004.4930.1 0.69 -1.6 4,688,575 + Xcc-8004.4930.1 0.69 +0.4 4,688,575 + Xcc-8004.4930.1 0.69 +1.0 4,688,575 + Xcc-8004.4930.1 0.69 -0.2 4,688,576 - Xcc-8004.4930.1 0.69 +0.9 4,688,576 - Xcc-8004.4930.1 0.69 -1.4 4,688,576 - Xcc-8004.4930.1 0.69 +0.5 4,688,576 - Xcc-8004.4930.1 0.69 -1.5 4,688,680 - Xcc-8004.4930.1 0.77 -0.2 4,688,685 + Xcc-8004.4930.1 0.78 -0.1 4,688,685 + Xcc-8004.4930.1 0.78 +0.8 4,688,685 + Xcc-8004.4930.1 0.78 -0.4 4,688,686 - Xcc-8004.4930.1 0.78 +1.0 4,688,686 - Xcc-8004.4930.1 0.78 -1.7 4,688,686 - Xcc-8004.4930.1 0.78 +0.2 4,688,686 - Xcc-8004.4930.1 0.78 +0.6 4,688,689 + Xcc-8004.4930.1 0.78 -2.0 4,688,689 + Xcc-8004.4930.1 0.78 -0.1 4,688,689 + Xcc-8004.4930.1 0.78 +1.4 4,688,689 + Xcc-8004.4930.1 0.78 +0.2 4,688,689 + Xcc-8004.4930.1 0.78 -0.3 4,688,689 + Xcc-8004.4930.1 0.78 +1.0 4,688,689 + Xcc-8004.4930.1 0.78 -0.2 4,688,690 - Xcc-8004.4930.1 0.78 +0.6 4,688,690 - Xcc-8004.4930.1 0.78 +1.2 4,688,690 - Xcc-8004.4930.1 0.78 -1.5 4,688,866 + +0.2 4,688,866 + +1.3 4,688,866 + -1.3 4,688,866 + +0.4 4,688,866 + -0.3 4,689,120 + Xcc-8004.4931.1 0.10 +0.9 4,689,165 + Xcc-8004.4931.1 0.15 -1.3 4,689,165 + Xcc-8004.4931.1 0.15 +0.7 4,689,165 + Xcc-8004.4931.1 0.15 -0.1 4,689,165 + Xcc-8004.4931.1 0.15 -2.1 4,689,165 + Xcc-8004.4931.1 0.15 -1.6 4,689,165 + Xcc-8004.4931.1 0.15 +1.5 4,689,165 + Xcc-8004.4931.1 0.15 -0.1 4,689,166 - Xcc-8004.4931.1 0.15 -0.9 4,689,166 - Xcc-8004.4931.1 0.15 -0.9 4,689,166 - Xcc-8004.4931.1 0.15 +0.9 4,689,166 - Xcc-8004.4931.1 0.15 -1.2 4,689,166 - Xcc-8004.4931.1 0.15 +0.4 4,689,166 - Xcc-8004.4931.1 0.15 -1.0 4,689,389 - Xcc-8004.4931.1 0.39 +0.4 4,689,412 - Xcc-8004.4931.1 0.42 -1.3 4,689,441 + Xcc-8004.4931.1 0.45 -1.1 4,689,441 + Xcc-8004.4931.1 0.45 -2.5 4,689,442 - Xcc-8004.4931.1 0.45 +0.4 4,689,442 - Xcc-8004.4931.1 0.45 -0.0 4,689,444 + Xcc-8004.4931.1 0.45 +0.2 4,689,444 + Xcc-8004.4931.1 0.45 +2.5 4,689,444 + Xcc-8004.4931.1 0.45 -0.2 4,689,444 + Xcc-8004.4931.1 0.45 -0.8 4,689,444 + Xcc-8004.4931.1 0.45 +0.4 4,689,444 + Xcc-8004.4931.1 0.45 +0.2 4,689,444 + Xcc-8004.4931.1 0.45 -0.5 4,689,445 - Xcc-8004.4931.1 0.45 -0.3 4,689,445 - Xcc-8004.4931.1 0.45 -0.8 4,689,445 - Xcc-8004.4931.1 0.45 +0.3 4,689,445 - Xcc-8004.4931.1 0.45 -0.5 4,689,445 - Xcc-8004.4931.1 0.45 +0.9 4,689,445 - Xcc-8004.4931.1 0.45 -0.3 4,689,445 - Xcc-8004.4931.1 0.45 -0.7 4,689,462 + Xcc-8004.4931.1 0.47 -1.3 4,689,462 + Xcc-8004.4931.1 0.47 -0.8 4,689,463 - Xcc-8004.4931.1 0.47 -0.3 4,689,463 - Xcc-8004.4931.1 0.47 -0.6 4,689,474 + Xcc-8004.4931.1 0.48 -1.0 4,689,474 + Xcc-8004.4931.1 0.48 -1.2 4,689,487 - Xcc-8004.4931.1 0.50 +0.5 4,689,660 + Xcc-8004.4931.1 0.68 -0.0 4,689,660 + Xcc-8004.4931.1 0.68 -1.2 4,689,681 + Xcc-8004.4931.1 0.71 +0.2 4,689,723 + Xcc-8004.4931.1 0.75 -0.4 4,689,723 + Xcc-8004.4931.1 0.75 -0.8 4,689,723 + Xcc-8004.4931.1 0.75 +0.2 4,689,724 - Xcc-8004.4931.1 0.75 +0.4 4,689,724 - Xcc-8004.4931.1 0.75 +1.2 4,689,724 - Xcc-8004.4931.1 0.75 -0.4 4,689,729 + Xcc-8004.4931.1 0.76 -1.5 4,689,729 + Xcc-8004.4931.1 0.76 -0.6 4,689,729 + Xcc-8004.4931.1 0.76 +1.1 4,689,729 + Xcc-8004.4931.1 0.76 +0.9 4,689,730 - Xcc-8004.4931.1 0.76 +1.4 4,689,730 - Xcc-8004.4931.1 0.76 +0.0 4,689,739 - Xcc-8004.4931.1 0.77 +1.2 4,689,750 + Xcc-8004.4931.1 0.78 +0.1 4,689,751 - Xcc-8004.4931.1 0.78 -2.6 4,689,952 - -0.1 4,689,952 - +0.9
Or see this region's nucleotide sequence