Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4911.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4910.1 and Xcc-8004.4911.1 are separated by 114 nucleotidesXcc-8004.4911.1 and Xcc-8004.4912.1 are separated by 528 nucleotides Xcc-8004.4910.1: Xcc-8004.4910.1 - Spermidine synthase (EC 2.5.1.16), at 4,672,242 to 4,673,099 Xcc-8004.4910.1 Xcc-8004.4911.1: Xcc-8004.4911.1 - FIG01210100: hypothetical protein, at 4,673,214 to 4,673,996 Xcc-8004.4911.1 Xcc-8004.4912.1: Xcc-8004.4912.1 - FIG01210621: hypothetical protein, at 4,674,525 to 4,675,184 Xcc-8004.4912.1 Position (kb) 4673 4674Strain fitness (log2 ratio) -2 -1 0 1 2at 4673.097 kb on + strandat 4673.097 kb on + strandat 4673.124 kb on + strandat 4673.124 kb on + strandat 4673.125 kb on - strandat 4673.281 kb on + strandat 4673.284 kb on + strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.287 kb on + strandat 4673.287 kb on + strandat 4673.287 kb on + strandat 4673.287 kb on + strandat 4673.288 kb on - strandat 4673.288 kb on - strandat 4673.288 kb on - strandat 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.300 kb on - strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.312 kb on + strand, within Xcc-8004.4911.1at 4673.312 kb on + strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.371 kb on + strand, within Xcc-8004.4911.1at 4673.372 kb on - strand, within Xcc-8004.4911.1at 4673.372 kb on - strand, within Xcc-8004.4911.1at 4673.423 kb on - strand, within Xcc-8004.4911.1at 4673.504 kb on + strand, within Xcc-8004.4911.1at 4673.505 kb on - strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.516 kb on - strand, within Xcc-8004.4911.1at 4673.641 kb on + strand, within Xcc-8004.4911.1at 4673.642 kb on - strand, within Xcc-8004.4911.1at 4673.642 kb on - strand, within Xcc-8004.4911.1at 4673.642 kb on - strand, within Xcc-8004.4911.1at 4673.672 kb on + strand, within Xcc-8004.4911.1at 4673.672 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.774 kb on + strand, within Xcc-8004.4911.1at 4673.810 kb on + strand, within Xcc-8004.4911.1at 4673.810 kb on + strand, within Xcc-8004.4911.1at 4673.811 kb on - strand, within Xcc-8004.4911.1at 4673.811 kb on - strand, within Xcc-8004.4911.1at 4673.811 kb on - strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.903 kb on - strand, within Xcc-8004.4911.1at 4674.090 kb on + strandat 4674.090 kb on + strandat 4674.090 kb on + strandat 4674.091 kb on - strandat 4674.091 kb on - strandat 4674.091 kb on - strandat 4674.117 kb on + strandat 4674.117 kb on + strandat 4674.117 kb on + strandat 4674.117 kb on + strandat 4674.118 kb on - strandat 4674.118 kb on - strandat 4674.215 kb on + strandat 4674.215 kb on + strandat 4674.216 kb on - strandat 4674.293 kb on + strandat 4674.293 kb on + strandat 4674.293 kb on + strandat 4674.293 kb on + strandat 4674.293 kb on + strandat 4674.293 kb on + strandat 4674.293 kb on + strandat 4674.294 kb on - strandat 4674.294 kb on - strandat 4674.294 kb on - strandat 4674.294 kb on - strandat 4674.322 kb on + strandat 4674.322 kb on + strandat 4674.323 kb on - strandat 4674.323 kb on - strandat 4674.323 kb on - strandat 4674.323 kb on - strandat 4674.323 kb on - strandat 4674.438 kb on + strandat 4674.439 kb on - strandat 4674.439 kb on - strandat 4674.444 kb on + strandat 4674.445 kb on - strandat 4674.531 kb on + strandat 4674.531 kb on + strandat 4674.532 kb on - strandat 4674.532 kb on - strandat 4674.532 kb on - strandat 4674.616 kb on - strand, within Xcc-8004.4912.1at 4674.616 kb on - strand, within Xcc-8004.4912.1at 4674.616 kb on - strand, within Xcc-8004.4912.1at 4674.657 kb on + strand, within Xcc-8004.4912.1at 4674.658 kb on - strand, within Xcc-8004.4912.1at 4674.658 kb on - strand, within Xcc-8004.4912.1at 4674.994 kb on + strand, within Xcc-8004.4912.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,673,097 + +0.6
4,673,097 + -1.1
4,673,124 + +1.8
4,673,124 + +1.2
4,673,125 - +0.3
4,673,281 + -1.7
4,673,284 + +0.6
4,673,285 - -1.1
4,673,285 - -0.4
4,673,285 - -0.8
4,673,285 - +0.4
4,673,285 - +2.0
4,673,285 - -0.0
4,673,285 - -1.7
4,673,287 + +0.0
4,673,287 + -0.4
4,673,287 + +0.6
4,673,287 + -1.6
4,673,288 - -2.0
4,673,288 - -1.1
4,673,288 - -0.1
4,673,299 + Xcc-8004.4911.1 0.11 +0.6
4,673,299 + Xcc-8004.4911.1 0.11 +0.7
4,673,299 + Xcc-8004.4911.1 0.11 +0.0
4,673,299 + Xcc-8004.4911.1 0.11 +1.0
4,673,300 - Xcc-8004.4911.1 0.11 -1.7
4,673,305 + Xcc-8004.4911.1 0.12 -0.1
4,673,305 + Xcc-8004.4911.1 0.12 -1.4
4,673,305 + Xcc-8004.4911.1 0.12 +1.1
4,673,305 + Xcc-8004.4911.1 0.12 +0.6
4,673,305 + Xcc-8004.4911.1 0.12 -0.7
4,673,305 + Xcc-8004.4911.1 0.12 +0.3
4,673,305 + Xcc-8004.4911.1 0.12 -1.2
4,673,305 + Xcc-8004.4911.1 0.12 +0.6
4,673,305 + Xcc-8004.4911.1 0.12 -2.2
4,673,305 + Xcc-8004.4911.1 0.12 -1.8
4,673,305 + Xcc-8004.4911.1 0.12 -0.7
4,673,305 + Xcc-8004.4911.1 0.12 -0.3
4,673,305 + Xcc-8004.4911.1 0.12 +0.9
4,673,306 - Xcc-8004.4911.1 0.12 -0.8
4,673,306 - Xcc-8004.4911.1 0.12 +0.4
4,673,306 - Xcc-8004.4911.1 0.12 -0.2
4,673,306 - Xcc-8004.4911.1 0.12 -0.0
4,673,306 - Xcc-8004.4911.1 0.12 +1.1
4,673,306 - Xcc-8004.4911.1 0.12 -1.3
4,673,306 - Xcc-8004.4911.1 0.12 +1.8
4,673,306 - Xcc-8004.4911.1 0.12 +1.5
4,673,306 - Xcc-8004.4911.1 0.12 -1.4
4,673,306 - Xcc-8004.4911.1 0.12 -2.0
4,673,306 - Xcc-8004.4911.1 0.12 -0.2
4,673,306 - Xcc-8004.4911.1 0.12 +0.3
4,673,306 - Xcc-8004.4911.1 0.12 +1.8
4,673,306 - Xcc-8004.4911.1 0.12 -1.8
4,673,312 + Xcc-8004.4911.1 0.13 -1.0
4,673,312 + Xcc-8004.4911.1 0.13 -1.7
4,673,313 - Xcc-8004.4911.1 0.13 +1.4
4,673,313 - Xcc-8004.4911.1 0.13 +0.6
4,673,313 - Xcc-8004.4911.1 0.13 +0.8
4,673,313 - Xcc-8004.4911.1 0.13 -1.2
4,673,315 - Xcc-8004.4911.1 0.13 +0.0
4,673,315 - Xcc-8004.4911.1 0.13 +0.7
4,673,315 - Xcc-8004.4911.1 0.13 +0.2
4,673,315 - Xcc-8004.4911.1 0.13 +1.0
4,673,315 - Xcc-8004.4911.1 0.13 +0.4
4,673,371 + Xcc-8004.4911.1 0.20 -1.0
4,673,372 - Xcc-8004.4911.1 0.20 +0.7
4,673,372 - Xcc-8004.4911.1 0.20 +0.8
4,673,423 - Xcc-8004.4911.1 0.27 -0.1
4,673,504 + Xcc-8004.4911.1 0.37 +0.4
4,673,505 - Xcc-8004.4911.1 0.37 +0.8
4,673,512 + Xcc-8004.4911.1 0.38 +0.8
4,673,512 + Xcc-8004.4911.1 0.38 +0.2
4,673,512 + Xcc-8004.4911.1 0.38 -1.1
4,673,512 + Xcc-8004.4911.1 0.38 -0.7
4,673,512 + Xcc-8004.4911.1 0.38 -0.6
4,673,512 + Xcc-8004.4911.1 0.38 -0.1
4,673,513 - Xcc-8004.4911.1 0.38 -0.5
4,673,513 - Xcc-8004.4911.1 0.38 -2.1
4,673,513 - Xcc-8004.4911.1 0.38 -1.1
4,673,513 - Xcc-8004.4911.1 0.38 +1.1
4,673,513 - Xcc-8004.4911.1 0.38 -0.8
4,673,513 - Xcc-8004.4911.1 0.38 +1.2
4,673,513 - Xcc-8004.4911.1 0.38 -0.8
4,673,513 - Xcc-8004.4911.1 0.38 +0.2
4,673,515 + Xcc-8004.4911.1 0.38 +0.3
4,673,515 + Xcc-8004.4911.1 0.38 +0.8
4,673,515 + Xcc-8004.4911.1 0.38 +0.7
4,673,515 + Xcc-8004.4911.1 0.38 +0.6
4,673,515 + Xcc-8004.4911.1 0.38 -1.7
4,673,515 + Xcc-8004.4911.1 0.38 -0.1
4,673,515 + Xcc-8004.4911.1 0.38 -2.0
4,673,516 - Xcc-8004.4911.1 0.39 +1.2
4,673,641 + Xcc-8004.4911.1 0.55 -0.3
4,673,642 - Xcc-8004.4911.1 0.55 -2.5
4,673,642 - Xcc-8004.4911.1 0.55 -1.6
4,673,642 - Xcc-8004.4911.1 0.55 -0.5
4,673,672 + Xcc-8004.4911.1 0.58 -1.3
4,673,672 + Xcc-8004.4911.1 0.58 +0.9
4,673,725 + Xcc-8004.4911.1 0.65 +0.1
4,673,725 + Xcc-8004.4911.1 0.65 +0.9
4,673,725 + Xcc-8004.4911.1 0.65 -0.1
4,673,725 + Xcc-8004.4911.1 0.65 +0.5
4,673,725 + Xcc-8004.4911.1 0.65 -0.4
4,673,725 + Xcc-8004.4911.1 0.65 -0.8
4,673,725 + Xcc-8004.4911.1 0.65 +0.7
4,673,726 - Xcc-8004.4911.1 0.65 +1.2
4,673,726 - Xcc-8004.4911.1 0.65 -0.1
4,673,726 - Xcc-8004.4911.1 0.65 +0.1
4,673,726 - Xcc-8004.4911.1 0.65 +0.6
4,673,726 - Xcc-8004.4911.1 0.65 -1.6
4,673,726 - Xcc-8004.4911.1 0.65 -1.0
4,673,726 - Xcc-8004.4911.1 0.65 +1.9
4,673,726 - Xcc-8004.4911.1 0.65 +0.2
4,673,774 + Xcc-8004.4911.1 0.72 +0.2
4,673,810 + Xcc-8004.4911.1 0.76 -0.9
4,673,810 + Xcc-8004.4911.1 0.76 -1.6
4,673,811 - Xcc-8004.4911.1 0.76 -0.1
4,673,811 - Xcc-8004.4911.1 0.76 -0.7
4,673,811 - Xcc-8004.4911.1 0.76 +0.2
4,673,843 + Xcc-8004.4911.1 0.80 +1.4
4,673,843 + Xcc-8004.4911.1 0.80 +1.4
4,673,843 + Xcc-8004.4911.1 0.80 -1.3
4,673,843 + Xcc-8004.4911.1 0.80 +1.3
4,673,843 + Xcc-8004.4911.1 0.80 -0.6
4,673,843 + Xcc-8004.4911.1 0.80 -0.0
4,673,844 - Xcc-8004.4911.1 0.80 -1.0
4,673,844 - Xcc-8004.4911.1 0.80 -0.1
4,673,844 - Xcc-8004.4911.1 0.80 +1.2
4,673,844 - Xcc-8004.4911.1 0.80 +0.9
4,673,844 - Xcc-8004.4911.1 0.80 -1.2
4,673,844 - Xcc-8004.4911.1 0.80 -0.7
4,673,844 - Xcc-8004.4911.1 0.80 -0.8
4,673,903 - Xcc-8004.4911.1 0.88 -0.5
4,674,090 + +0.7
4,674,090 + +1.3
4,674,090 + +0.2
4,674,091 - +1.8
4,674,091 - -1.5
4,674,091 - +0.9
4,674,117 + +0.7
4,674,117 + -0.4
4,674,117 + -2.3
4,674,117 + -0.0
4,674,118 - -0.8
4,674,118 - +0.4
4,674,215 + +0.9
4,674,215 + +0.0
4,674,216 - +0.9
4,674,293 + -0.2
4,674,293 + -0.2
4,674,293 + +0.4
4,674,293 + +1.0
4,674,293 + +0.8
4,674,293 + +0.5
4,674,293 + -0.3
4,674,294 - +0.5
4,674,294 - -1.3
4,674,294 - +0.7
4,674,294 - +1.2
4,674,322 + -1.1
4,674,322 + -1.4
4,674,323 - +0.0
4,674,323 - +0.0
4,674,323 - +0.7
4,674,323 - -1.6
4,674,323 - -1.0
4,674,438 + -0.8
4,674,439 - +1.2
4,674,439 - -1.0
4,674,444 + -1.5
4,674,445 - +0.7
4,674,531 + +0.6
4,674,531 + -0.6
4,674,532 - -0.6
4,674,532 - +1.1
4,674,532 - +0.5
4,674,616 - Xcc-8004.4912.1 0.14 +0.7
4,674,616 - Xcc-8004.4912.1 0.14 -0.5
4,674,616 - Xcc-8004.4912.1 0.14 -0.3
4,674,657 + Xcc-8004.4912.1 0.20 -2.0
4,674,658 - Xcc-8004.4912.1 0.20 -1.9
4,674,658 - Xcc-8004.4912.1 0.20 +1.8
4,674,994 + Xcc-8004.4912.1 0.71 +1.2

Or see this region's nucleotide sequence