Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4766.1 and Xcc-8004.4767.1 are separated by 39 nucleotides Xcc-8004.4767.1 and Xcc-8004.4768.1 overlap by 37 nucleotides Xcc-8004.4768.1 and Xcc-8004.4769.1 are separated by 119 nucleotides
Xcc-8004.4766.1: Xcc-8004.4766.1 - Helicase PriA essential for oriC/DnaA-independent DNA replication, at 4,536,747 to 4,537,004
Xcc-8004.4766.1
Xcc-8004.4767.1: Xcc-8004.4767.1 - FIG01209685: hypothetical protein, at 4,537,044 to 4,537,877
Xcc-8004.4767.1
Xcc-8004.4768.1: Xcc-8004.4768.1 - FIG01210642: hypothetical protein, at 4,537,841 to 4,538,380
Xcc-8004.4768.1
Xcc-8004.4769.1: Xcc-8004.4769.1 - NADH dehydrogenase (EC 1.6.99.3), at 4,538,500 to 4,539,786
Xcc-8004.4769.1
Position (kb) 4537
4538
4539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4537.252 kb on + strand, within Xcc-8004.4767.1 at 4537.252 kb on + strand, within Xcc-8004.4767.1 at 4537.252 kb on + strand, within Xcc-8004.4767.1 at 4537.253 kb on - strand, within Xcc-8004.4767.1 at 4537.253 kb on - strand, within Xcc-8004.4767.1 at 4537.253 kb on - strand, within Xcc-8004.4767.1 at 4537.456 kb on + strand, within Xcc-8004.4767.1 at 4537.456 kb on + strand, within Xcc-8004.4767.1 at 4537.456 kb on + strand, within Xcc-8004.4767.1 at 4537.456 kb on + strand, within Xcc-8004.4767.1 at 4537.456 kb on + strand, within Xcc-8004.4767.1 at 4537.456 kb on + strand, within Xcc-8004.4767.1 at 4537.457 kb on - strand, within Xcc-8004.4767.1 at 4537.457 kb on - strand, within Xcc-8004.4767.1 at 4537.457 kb on - strand, within Xcc-8004.4767.1 at 4537.516 kb on + strand, within Xcc-8004.4767.1 at 4537.610 kb on - strand, within Xcc-8004.4767.1 at 4537.670 kb on - strand, within Xcc-8004.4767.1 at 4537.753 kb on + strand, within Xcc-8004.4767.1 at 4537.753 kb on + strand, within Xcc-8004.4767.1 at 4538.029 kb on + strand, within Xcc-8004.4768.1 at 4538.029 kb on + strand, within Xcc-8004.4768.1 at 4538.030 kb on - strand, within Xcc-8004.4768.1 at 4538.104 kb on + strand, within Xcc-8004.4768.1 at 4538.105 kb on - strand, within Xcc-8004.4768.1 at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.380 kb on + strand at 4538.381 kb on - strand at 4538.381 kb on - strand at 4538.381 kb on - strand at 4538.381 kb on - strand at 4538.381 kb on - strand at 4538.381 kb on - strand at 4538.381 kb on - strand at 4538.564 kb on + strand at 4538.564 kb on + strand at 4538.565 kb on - strand at 4538.650 kb on + strand, within Xcc-8004.4769.1 at 4538.650 kb on + strand, within Xcc-8004.4769.1 at 4538.650 kb on + strand, within Xcc-8004.4769.1 at 4538.651 kb on - strand, within Xcc-8004.4769.1 at 4538.651 kb on - strand, within Xcc-8004.4769.1 at 4538.809 kb on + strand, within Xcc-8004.4769.1 at 4538.809 kb on + strand, within Xcc-8004.4769.1 at 4538.809 kb on + strand, within Xcc-8004.4769.1 at 4538.809 kb on + strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.810 kb on - strand, within Xcc-8004.4769.1 at 4538.848 kb on + strand, within Xcc-8004.4769.1 at 4538.915 kb on + strand, within Xcc-8004.4769.1 at 4538.915 kb on + strand, within Xcc-8004.4769.1 at 4538.916 kb on - strand, within Xcc-8004.4769.1 at 4538.916 kb on - strand, within Xcc-8004.4769.1 at 4538.916 kb on - strand, within Xcc-8004.4769.1 at 4538.916 kb on - strand, within Xcc-8004.4769.1 at 4538.916 kb on - strand, within Xcc-8004.4769.1 at 4539.166 kb on - strand, within Xcc-8004.4769.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,537,252 + Xcc-8004.4767.1 0.25 -0.8 4,537,252 + Xcc-8004.4767.1 0.25 +0.0 4,537,252 + Xcc-8004.4767.1 0.25 -0.6 4,537,253 - Xcc-8004.4767.1 0.25 +1.0 4,537,253 - Xcc-8004.4767.1 0.25 +0.4 4,537,253 - Xcc-8004.4767.1 0.25 -0.2 4,537,456 + Xcc-8004.4767.1 0.49 +2.0 4,537,456 + Xcc-8004.4767.1 0.49 -0.6 4,537,456 + Xcc-8004.4767.1 0.49 -1.4 4,537,456 + Xcc-8004.4767.1 0.49 +1.5 4,537,456 + Xcc-8004.4767.1 0.49 +1.3 4,537,456 + Xcc-8004.4767.1 0.49 -0.2 4,537,457 - Xcc-8004.4767.1 0.50 -3.1 4,537,457 - Xcc-8004.4767.1 0.50 -2.4 4,537,457 - Xcc-8004.4767.1 0.50 -0.7 4,537,516 + Xcc-8004.4767.1 0.57 +0.6 4,537,610 - Xcc-8004.4767.1 0.68 -0.1 4,537,670 - Xcc-8004.4767.1 0.75 -0.2 4,537,753 + Xcc-8004.4767.1 0.85 -0.6 4,537,753 + Xcc-8004.4767.1 0.85 -0.4 4,538,029 + Xcc-8004.4768.1 0.35 -0.8 4,538,029 + Xcc-8004.4768.1 0.35 +0.4 4,538,030 - Xcc-8004.4768.1 0.35 -0.9 4,538,104 + Xcc-8004.4768.1 0.49 +0.4 4,538,105 - Xcc-8004.4768.1 0.49 -1.2 4,538,380 + -0.9 4,538,380 + +1.1 4,538,380 + +1.2 4,538,380 + -1.1 4,538,380 + +0.7 4,538,380 + -0.4 4,538,380 + +1.8 4,538,380 + -0.5 4,538,380 + -0.9 4,538,381 - +0.7 4,538,381 - -0.3 4,538,381 - -0.0 4,538,381 - -0.3 4,538,381 - -0.2 4,538,381 - +1.2 4,538,381 - +0.7 4,538,564 + -0.1 4,538,564 + -1.7 4,538,565 - -1.4 4,538,650 + Xcc-8004.4769.1 0.12 -0.1 4,538,650 + Xcc-8004.4769.1 0.12 -1.0 4,538,650 + Xcc-8004.4769.1 0.12 +2.0 4,538,651 - Xcc-8004.4769.1 0.12 +1.2 4,538,651 - Xcc-8004.4769.1 0.12 +0.8 4,538,809 + Xcc-8004.4769.1 0.24 -0.1 4,538,809 + Xcc-8004.4769.1 0.24 -0.8 4,538,809 + Xcc-8004.4769.1 0.24 -0.6 4,538,809 + Xcc-8004.4769.1 0.24 +0.8 4,538,810 - Xcc-8004.4769.1 0.24 -1.0 4,538,810 - Xcc-8004.4769.1 0.24 -0.2 4,538,810 - Xcc-8004.4769.1 0.24 +0.3 4,538,810 - Xcc-8004.4769.1 0.24 -0.1 4,538,810 - Xcc-8004.4769.1 0.24 -0.9 4,538,810 - Xcc-8004.4769.1 0.24 -0.1 4,538,810 - Xcc-8004.4769.1 0.24 -0.8 4,538,810 - Xcc-8004.4769.1 0.24 -0.3 4,538,810 - Xcc-8004.4769.1 0.24 +0.2 4,538,848 + Xcc-8004.4769.1 0.27 +1.4 4,538,915 + Xcc-8004.4769.1 0.32 +0.6 4,538,915 + Xcc-8004.4769.1 0.32 +0.3 4,538,916 - Xcc-8004.4769.1 0.32 +1.2 4,538,916 - Xcc-8004.4769.1 0.32 +0.7 4,538,916 - Xcc-8004.4769.1 0.32 -0.2 4,538,916 - Xcc-8004.4769.1 0.32 -0.4 4,538,916 - Xcc-8004.4769.1 0.32 -1.8 4,539,166 - Xcc-8004.4769.1 0.52 +1.1
Or see this region's nucleotide sequence