Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4711.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4709.1 and Xcc-8004.4710.1 are separated by 168 nucleotidesXcc-8004.4710.1 and Xcc-8004.4711.1 overlap by 4 nucleotidesXcc-8004.4711.1 and Xcc-8004.4712.1 overlap by 4 nucleotides Xcc-8004.4709.1: Xcc-8004.4709.1 - Short-chain dehydrogenase/reductase SDR, at 4,487,133 to 4,488,035 Xcc-8004.4709.1 Xcc-8004.4710.1: Xcc-8004.4710.1 - FIG01211889: hypothetical protein, at 4,488,204 to 4,488,593 Xcc-8004.4710.1 Xcc-8004.4711.1: Xcc-8004.4711.1 - FIG01211524: hypothetical protein, at 4,488,590 to 4,489,156 Xcc-8004.4711.1 Xcc-8004.4712.1: Xcc-8004.4712.1 - Oxidoreductase, at 4,489,153 to 4,490,223 Xcc-8004.4712.1 Position (kb) 4488 4489 4490Strain fitness (log2 ratio) -2 -1 0 1 2at 4487.620 kb on + strand, within Xcc-8004.4709.1at 4487.620 kb on + strand, within Xcc-8004.4709.1at 4487.621 kb on - strand, within Xcc-8004.4709.1at 4487.621 kb on - strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.890 kb on + strand, within Xcc-8004.4709.1at 4487.890 kb on + strand, within Xcc-8004.4709.1at 4487.890 kb on + strand, within Xcc-8004.4709.1at 4487.950 kb on + strandat 4487.960 kb on - strandat 4488.340 kb on + strand, within Xcc-8004.4710.1at 4488.340 kb on + strand, within Xcc-8004.4710.1at 4488.390 kb on + strand, within Xcc-8004.4710.1at 4488.391 kb on - strand, within Xcc-8004.4710.1at 4488.391 kb on - strand, within Xcc-8004.4710.1at 4488.391 kb on - strand, within Xcc-8004.4710.1at 4488.437 kb on - strand, within Xcc-8004.4710.1at 4488.437 kb on - strand, within Xcc-8004.4710.1at 4488.437 kb on - strand, within Xcc-8004.4710.1at 4488.437 kb on - strand, within Xcc-8004.4710.1at 4488.715 kb on - strand, within Xcc-8004.4711.1at 4489.143 kb on - strandat 4489.545 kb on - strand, within Xcc-8004.4712.1at 4490.075 kb on + strand, within Xcc-8004.4712.1at 4490.075 kb on + strand, within Xcc-8004.4712.1at 4490.075 kb on + strand, within Xcc-8004.4712.1at 4490.075 kb on + strand, within Xcc-8004.4712.1at 4490.075 kb on + strand, within Xcc-8004.4712.1at 4490.075 kb on + strand, within Xcc-8004.4712.1at 4490.075 kb on + strand, within Xcc-8004.4712.1at 4490.076 kb on - strand, within Xcc-8004.4712.1at 4490.076 kb on - strand, within Xcc-8004.4712.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,487,620 + Xcc-8004.4709.1 0.54 +1.1
4,487,620 + Xcc-8004.4709.1 0.54 -0.7
4,487,621 - Xcc-8004.4709.1 0.54 +0.4
4,487,621 - Xcc-8004.4709.1 0.54 +1.3
4,487,752 + Xcc-8004.4709.1 0.69 -1.6
4,487,752 + Xcc-8004.4709.1 0.69 -0.8
4,487,752 + Xcc-8004.4709.1 0.69 +1.5
4,487,752 + Xcc-8004.4709.1 0.69 -0.6
4,487,753 - Xcc-8004.4709.1 0.69 +0.4
4,487,753 - Xcc-8004.4709.1 0.69 +1.8
4,487,753 - Xcc-8004.4709.1 0.69 +1.3
4,487,753 - Xcc-8004.4709.1 0.69 -0.5
4,487,890 + Xcc-8004.4709.1 0.84 -0.3
4,487,890 + Xcc-8004.4709.1 0.84 -0.5
4,487,890 + Xcc-8004.4709.1 0.84 -1.2
4,487,950 + +0.5
4,487,960 - -0.1
4,488,340 + Xcc-8004.4710.1 0.35 -1.7
4,488,340 + Xcc-8004.4710.1 0.35 -0.2
4,488,390 + Xcc-8004.4710.1 0.48 -0.4
4,488,391 - Xcc-8004.4710.1 0.48 +1.1
4,488,391 - Xcc-8004.4710.1 0.48 -2.7
4,488,391 - Xcc-8004.4710.1 0.48 -0.1
4,488,437 - Xcc-8004.4710.1 0.60 -1.8
4,488,437 - Xcc-8004.4710.1 0.60 -0.1
4,488,437 - Xcc-8004.4710.1 0.60 -0.2
4,488,437 - Xcc-8004.4710.1 0.60 -0.1
4,488,715 - Xcc-8004.4711.1 0.22 -0.1
4,489,143 - -1.3
4,489,545 - Xcc-8004.4712.1 0.37 -1.0
4,490,075 + Xcc-8004.4712.1 0.86 +1.7
4,490,075 + Xcc-8004.4712.1 0.86 +0.3
4,490,075 + Xcc-8004.4712.1 0.86 +0.9
4,490,075 + Xcc-8004.4712.1 0.86 +0.4
4,490,075 + Xcc-8004.4712.1 0.86 -0.5
4,490,075 + Xcc-8004.4712.1 0.86 -1.0
4,490,075 + Xcc-8004.4712.1 0.86 +1.2
4,490,076 - Xcc-8004.4712.1 0.86 +1.2
4,490,076 - Xcc-8004.4712.1 0.86 -0.5

Or see this region's nucleotide sequence