Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4532.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,328,790	+		Xcc-8004.4530.1	0.66	-0.1
4,328,791	-		Xcc-8004.4530.1	0.67	+1.0
4,328,791	-		Xcc-8004.4530.1	0.67	+0.4
4,328,791	-		Xcc-8004.4530.1	0.67	+1.1
4,328,808	+		Xcc-8004.4530.1	0.69	-1.6
4,328,808	+		Xcc-8004.4530.1	0.69	+1.3
4,328,809	-		Xcc-8004.4530.1	0.69	+2.5
4,328,809	-		Xcc-8004.4530.1	0.69	-0.1
4,328,997	+				-0.1
4,328,997	+				-0.7
4,328,997	+				-0.4
4,328,997	+				+1.5
4,328,997	+				-0.4
4,328,998	-				-1.0
4,328,998	-				+0.9
4,328,998	-				-1.3
4,328,998	-				-0.3
4,328,998	-				+0.4
4,328,998	-				+0.7
4,328,998	-				+0.6
4,328,998	-				-0.7
4,329,066	+				+1.4
4,329,066	+				-0.6
4,329,277	-				+1.7
4,329,330	+				+0.9
4,329,330	+				+1.6
4,329,330	+				+0.7
4,329,330	+				-0.2
4,329,330	+				-1.2
4,329,331	-				+0.2
4,329,331	-				-1.6
4,329,331	-				-1.1
4,329,331	-				-0.7
4,329,331	-				-1.0
4,329,331	-				+0.1
4,329,331	-				-0.7
4,329,331	-				+1.0
4,329,453	+		Xcc-8004.4532.1	0.34	+1.5
4,329,453	+		Xcc-8004.4532.1	0.34	+1.7
4,329,453	+		Xcc-8004.4532.1	0.34	+0.2
4,329,453	+		Xcc-8004.4532.1	0.34	-0.0
4,329,453	+		Xcc-8004.4532.1	0.34	+0.9
4,329,453	+		Xcc-8004.4532.1	0.34	+1.0
4,329,454	-		Xcc-8004.4532.1	0.34	+0.9
4,329,454	-		Xcc-8004.4532.1	0.34	+0.7
4,329,454	-		Xcc-8004.4532.1	0.34	+0.2
4,329,459	+		Xcc-8004.4532.1	0.35	+0.8
4,329,459	+		Xcc-8004.4532.1	0.35	-0.8
4,329,460	-		Xcc-8004.4532.1	0.36	-0.9
4,329,460	-		Xcc-8004.4532.1	0.36	+0.4
4,329,460	-		Xcc-8004.4532.1	0.36	-0.2
4,329,555	-		Xcc-8004.4532.1	0.55	-1.5
4,329,603	-		Xcc-8004.4532.1	0.65	+1.1
4,329,603	-		Xcc-8004.4532.1	0.65	+1.1
4,329,650	-		Xcc-8004.4532.1	0.75	-0.8
4,329,773	-				+0.8
4,329,879	+		Xcc-8004.4533.1	0.28	-0.5
4,329,879	+		Xcc-8004.4533.1	0.28	+0.4
4,329,880	-		Xcc-8004.4533.1	0.29	+0.4
4,329,923	+		Xcc-8004.4533.1	0.40	-1.0
4,329,924	-		Xcc-8004.4533.1	0.40	-0.1
4,329,924	-		Xcc-8004.4533.1	0.40	-1.1
4,329,924	-		Xcc-8004.4533.1	0.40	-0.4
4,330,001	+		Xcc-8004.4533.1	0.60	-2.5
4,330,002	-		Xcc-8004.4533.1	0.60	+1.0
4,330,074	-		Xcc-8004.4533.1	0.78	-1.8
4,330,179	+				+0.3
4,330,179	+				-0.4
4,330,179	+				+0.8
4,330,179	+				+0.4
4,330,180	-				-0.2
4,330,180	-				+0.5
4,330,180	-				+1.6
4,330,180	-				+1.2
4,330,244	+				+0.7
4,330,244	+				+0.3
4,330,280	+				-0.0
4,330,366	+				+1.7
4,330,366	+				-0.6
4,330,366	+				-1.6
4,330,367	-				+0.5
4,330,367	-				-0.2
4,330,367	-				+1.2
4,330,389	+				-1.3
4,330,389	+				+0.8
4,330,389	+				-1.7
4,330,389	+				+0.1
4,330,389	+				+1.2
4,330,389	+				+1.0
4,330,389	+				-0.6
4,330,389	+				+2.0
4,330,389	+				+0.4
4,330,389	+				+2.5
4,330,389	+				+1.7
4,330,389	+				-0.7
4,330,390	-				+2.1
4,330,390	-				-0.7
4,330,390	-				-1.3
4,330,390	-				-0.7
4,330,390	-				-0.2
4,330,390	-				-0.9
4,330,390	-				+0.6
4,330,390	-				-0.1
4,330,390	-				+0.3
4,330,390	-				-0.5
4,330,395	+				-0.1
4,330,395	+				-0.1
4,330,395	+				-1.7
4,330,395	+				-0.5
4,330,396	-				-1.2
4,330,396	-				+0.2
4,330,396	-				+0.3
4,330,396	-				+0.2
4,330,396	-				-1.5
4,330,396	-				-1.4
4,330,396	-				-0.7
4,330,589	-		Xcc-8004.4534.1	0.12	-1.6
4,330,589	-		Xcc-8004.4534.1	0.12	-1.0