Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4458.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4456.1 and Xcc-8004.4457.1 overlap by 4 nucleotidesXcc-8004.4457.1 and Xcc-8004.4458.1 are separated by 144 nucleotidesXcc-8004.4458.1 and Xcc-8004.4459.1 are separated by 113 nucleotides Xcc-8004.4456.1: Xcc-8004.4456.1 - FIG01209676: hypothetical protein, at 4,273,085 to 4,273,552 Xcc-8004.4456.1 Xcc-8004.4457.1: Xcc-8004.4457.1 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 4,273,549 to 4,274,313 Xcc-8004.4457.1 Xcc-8004.4458.1: Xcc-8004.4458.1 - FIG01213248: hypothetical protein, at 4,274,458 to 4,274,856 Xcc-8004.4458.1 Xcc-8004.4459.1: Xcc-8004.4459.1 - Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type, at 4,274,970 to 4,276,664 Xcc-8004.4459.1 Position (kb) 4274 4275Strain fitness (log2 ratio) -2 -1 0 1 2at 4273.614 kb on - strandat 4273.614 kb on - strandat 4273.614 kb on - strandat 4273.614 kb on - strandat 4273.614 kb on - strandat 4273.806 kb on - strand, within Xcc-8004.4457.1at 4273.974 kb on - strand, within Xcc-8004.4457.1at 4273.974 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.049 kb on - strand, within Xcc-8004.4457.1at 4274.103 kb on - strand, within Xcc-8004.4457.1at 4274.103 kb on - strand, within Xcc-8004.4457.1at 4274.103 kb on - strand, within Xcc-8004.4457.1at 4274.103 kb on - strand, within Xcc-8004.4457.1at 4274.283 kb on - strandat 4274.283 kb on - strandat 4274.283 kb on - strandat 4274.283 kb on - strandat 4274.283 kb on - strandat 4274.283 kb on - strandat 4274.333 kb on + strandat 4274.445 kb on + strandat 4274.445 kb on + strandat 4274.445 kb on + strandat 4274.445 kb on + strandat 4274.445 kb on + strandat 4274.446 kb on - strandat 4274.446 kb on - strandat 4274.525 kb on + strand, within Xcc-8004.4458.1at 4274.525 kb on + strand, within Xcc-8004.4458.1at 4274.525 kb on + strand, within Xcc-8004.4458.1at 4274.525 kb on + strand, within Xcc-8004.4458.1at 4274.525 kb on + strand, within Xcc-8004.4458.1at 4274.525 kb on + strand, within Xcc-8004.4458.1at 4274.525 kb on + strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.526 kb on - strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.527 kb on + strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.528 kb on - strand, within Xcc-8004.4458.1at 4274.560 kb on + strand, within Xcc-8004.4458.1at 4274.560 kb on + strand, within Xcc-8004.4458.1at 4274.561 kb on - strand, within Xcc-8004.4458.1at 4274.561 kb on - strand, within Xcc-8004.4458.1at 4274.561 kb on - strand, within Xcc-8004.4458.1at 4274.594 kb on - strand, within Xcc-8004.4458.1at 4274.594 kb on - strand, within Xcc-8004.4458.1at 4274.818 kb on + strandat 4274.818 kb on + strandat 4274.819 kb on - strandat 4274.819 kb on - strandat 4274.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,273,614 - -0.3
4,273,614 - +0.2
4,273,614 - +2.7
4,273,614 - -0.9
4,273,614 - -0.6
4,273,806 - Xcc-8004.4457.1 0.34 -2.3
4,273,974 - Xcc-8004.4457.1 0.56 -0.9
4,273,974 - Xcc-8004.4457.1 0.56 +2.1
4,274,049 - Xcc-8004.4457.1 0.65 -0.1
4,274,049 - Xcc-8004.4457.1 0.65 +1.1
4,274,049 - Xcc-8004.4457.1 0.65 +0.7
4,274,049 - Xcc-8004.4457.1 0.65 +1.7
4,274,049 - Xcc-8004.4457.1 0.65 +0.8
4,274,049 - Xcc-8004.4457.1 0.65 -0.6
4,274,049 - Xcc-8004.4457.1 0.65 -0.2
4,274,049 - Xcc-8004.4457.1 0.65 -0.6
4,274,103 - Xcc-8004.4457.1 0.72 +0.1
4,274,103 - Xcc-8004.4457.1 0.72 +2.7
4,274,103 - Xcc-8004.4457.1 0.72 +0.7
4,274,103 - Xcc-8004.4457.1 0.72 +1.5
4,274,283 - -0.5
4,274,283 - -1.3
4,274,283 - -1.7
4,274,283 - +0.5
4,274,283 - -0.1
4,274,283 - +0.4
4,274,333 + +0.1
4,274,445 + +0.5
4,274,445 + -0.9
4,274,445 + +0.3
4,274,445 + -0.4
4,274,445 + -1.4
4,274,446 - -2.3
4,274,446 - +0.7
4,274,525 + Xcc-8004.4458.1 0.17 -1.0
4,274,525 + Xcc-8004.4458.1 0.17 -0.5
4,274,525 + Xcc-8004.4458.1 0.17 -0.6
4,274,525 + Xcc-8004.4458.1 0.17 -0.9
4,274,525 + Xcc-8004.4458.1 0.17 +0.7
4,274,525 + Xcc-8004.4458.1 0.17 +1.1
4,274,525 + Xcc-8004.4458.1 0.17 +0.2
4,274,526 - Xcc-8004.4458.1 0.17 +0.4
4,274,526 - Xcc-8004.4458.1 0.17 +0.2
4,274,526 - Xcc-8004.4458.1 0.17 -0.1
4,274,526 - Xcc-8004.4458.1 0.17 -1.2
4,274,526 - Xcc-8004.4458.1 0.17 +0.2
4,274,526 - Xcc-8004.4458.1 0.17 -0.3
4,274,526 - Xcc-8004.4458.1 0.17 -0.1
4,274,526 - Xcc-8004.4458.1 0.17 +1.3
4,274,526 - Xcc-8004.4458.1 0.17 -1.5
4,274,526 - Xcc-8004.4458.1 0.17 -0.4
4,274,526 - Xcc-8004.4458.1 0.17 -2.3
4,274,526 - Xcc-8004.4458.1 0.17 +0.7
4,274,526 - Xcc-8004.4458.1 0.17 +0.9
4,274,527 + Xcc-8004.4458.1 0.17 -0.2
4,274,527 + Xcc-8004.4458.1 0.17 -0.6
4,274,527 + Xcc-8004.4458.1 0.17 -0.4
4,274,527 + Xcc-8004.4458.1 0.17 +0.3
4,274,527 + Xcc-8004.4458.1 0.17 -0.9
4,274,527 + Xcc-8004.4458.1 0.17 +0.7
4,274,527 + Xcc-8004.4458.1 0.17 +1.2
4,274,527 + Xcc-8004.4458.1 0.17 -0.5
4,274,527 + Xcc-8004.4458.1 0.17 -0.2
4,274,527 + Xcc-8004.4458.1 0.17 -1.1
4,274,527 + Xcc-8004.4458.1 0.17 -0.1
4,274,528 - Xcc-8004.4458.1 0.18 +0.2
4,274,528 - Xcc-8004.4458.1 0.18 -0.8
4,274,528 - Xcc-8004.4458.1 0.18 -1.5
4,274,528 - Xcc-8004.4458.1 0.18 -0.9
4,274,528 - Xcc-8004.4458.1 0.18 -0.7
4,274,528 - Xcc-8004.4458.1 0.18 +0.8
4,274,528 - Xcc-8004.4458.1 0.18 -0.7
4,274,528 - Xcc-8004.4458.1 0.18 -1.5
4,274,560 + Xcc-8004.4458.1 0.26 +0.4
4,274,560 + Xcc-8004.4458.1 0.26 -0.0
4,274,561 - Xcc-8004.4458.1 0.26 +0.3
4,274,561 - Xcc-8004.4458.1 0.26 -0.4
4,274,561 - Xcc-8004.4458.1 0.26 -2.6
4,274,594 - Xcc-8004.4458.1 0.34 -1.4
4,274,594 - Xcc-8004.4458.1 0.34 -0.6
4,274,818 + -1.5
4,274,818 + +0.5
4,274,819 - +0.0
4,274,819 - -1.2
4,274,819 - -0.4

Or see this region's nucleotide sequence