Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4289.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,102,559	+				-1.2
4,102,560	-				-0.1
4,102,729	+		Xcc-8004.4288.1	0.34	+1.9
4,102,729	+		Xcc-8004.4288.1	0.34	-0.1
4,102,729	+		Xcc-8004.4288.1	0.34	+0.1
4,102,729	+		Xcc-8004.4288.1	0.34	-2.5
4,102,730	-		Xcc-8004.4288.1	0.34	+0.6
4,102,730	-		Xcc-8004.4288.1	0.34	+0.6
4,102,730	-		Xcc-8004.4288.1	0.34	-0.2
4,102,730	-		Xcc-8004.4288.1	0.34	-0.4
4,103,033	+		Xcc-8004.4288.1	0.68	+1.2
4,103,251	+				-1.4
4,103,251	+				-1.5
4,103,251	+				+1.5
4,103,251	+				+1.0
4,103,251	+				-0.8
4,103,251	+				+0.3
4,103,251	+				-0.4
4,103,251	+				-0.7
4,103,252	-				+1.2
4,103,252	-				+1.7
4,103,252	-				-0.9
4,103,255	+				+1.4
4,103,255	+				-0.3
4,103,255	+				+0.4
4,103,255	+				+0.9
4,103,256	-				-0.1
4,103,256	-				-1.5
4,103,256	-				-1.2
4,103,722	+		Xcc-8004.4289.1	0.17	+0.7
4,103,722	+		Xcc-8004.4289.1	0.17	-1.0
4,103,723	-		Xcc-8004.4289.1	0.17	-0.3
4,103,723	-		Xcc-8004.4289.1	0.17	+0.7
4,103,723	-		Xcc-8004.4289.1	0.17	+1.3
4,103,723	-		Xcc-8004.4289.1	0.17	+1.1
4,103,884	-		Xcc-8004.4289.1	0.23	+1.0
4,103,926	+		Xcc-8004.4289.1	0.25	+1.0
4,104,383	+		Xcc-8004.4289.1	0.43	-0.9
4,104,383	+		Xcc-8004.4289.1	0.43	+1.0
4,104,383	+		Xcc-8004.4289.1	0.43	+0.9
4,104,384	-		Xcc-8004.4289.1	0.43	+0.0
4,104,384	-		Xcc-8004.4289.1	0.43	-1.0
4,104,384	-		Xcc-8004.4289.1	0.43	-1.1
4,104,487	+		Xcc-8004.4289.1	0.48	-0.2
4,104,526	+		Xcc-8004.4289.1	0.49	+0.1
4,104,526	+		Xcc-8004.4289.1	0.49	+0.3
4,104,526	+		Xcc-8004.4289.1	0.49	+0.7
4,104,527	-		Xcc-8004.4289.1	0.49	+1.3
4,104,527	-		Xcc-8004.4289.1	0.49	+0.2
4,104,817	+		Xcc-8004.4289.1	0.61	+0.4
4,104,817	+		Xcc-8004.4289.1	0.61	-0.7
4,104,817	+		Xcc-8004.4289.1	0.61	-0.9
4,104,818	-		Xcc-8004.4289.1	0.61	-0.9
4,104,818	-		Xcc-8004.4289.1	0.61	-1.4
4,105,019	-		Xcc-8004.4289.1	0.69	+0.1
4,105,043	+		Xcc-8004.4289.1	0.70	-1.1
4,105,043	+		Xcc-8004.4289.1	0.70	+1.1
4,105,044	-		Xcc-8004.4289.1	0.70	+0.2
4,105,118	-		Xcc-8004.4289.1	0.73	-0.2
4,105,235	+		Xcc-8004.4289.1	0.78	+1.2
4,105,235	+		Xcc-8004.4289.1	0.78	-0.6
4,105,235	+		Xcc-8004.4289.1	0.78	-0.9
4,105,236	-		Xcc-8004.4289.1	0.78	-0.2
4,105,236	-		Xcc-8004.4289.1	0.78	-0.8
4,105,267	+		Xcc-8004.4289.1	0.79	-0.5
4,105,267	+		Xcc-8004.4289.1	0.79	+1.3
4,105,267	+		Xcc-8004.4289.1	0.79	+2.1
4,105,268	-		Xcc-8004.4289.1	0.79	-0.8
4,105,268	-		Xcc-8004.4289.1	0.79	-0.8
4,105,268	-		Xcc-8004.4289.1	0.79	+0.7
4,105,268	-		Xcc-8004.4289.1	0.79	-0.2
4,105,755	+				-1.4
4,105,755	+				-1.6
4,105,779	+				+1.1
4,105,779	+				-0.4
4,105,779	+				-0.1
4,105,787	-				-2.7
4,105,787	-				+1.6
4,105,837	+				-0.9
4,105,837	+				+0.0
4,105,837	+				-0.0
4,105,837	+				+0.9
4,105,837	+				+0.4
4,105,837	+				+1.7
4,105,837	+				-1.6
4,105,838	-				-2.2
4,105,838	-				-0.5
4,105,838	-				-0.4
4,105,838	-				-0.1
4,105,839	+				-0.7
4,105,839	+				+0.3
4,105,840	-				+0.4
4,105,840	-				+0.9
4,105,840	-				-0.1
4,105,897	+				-0.9
4,105,898	-				-2.9
4,105,898	-				+1.4
4,105,898	-				+1.0
4,106,314	-		Xcc-8004.4290.1	0.39	-1.0
4,106,334	+		Xcc-8004.4290.1	0.42	+0.2
4,106,487	+		Xcc-8004.4290.1	0.58	+2.4
4,106,487	+		Xcc-8004.4290.1	0.58	-1.3
4,106,499	+		Xcc-8004.4290.1	0.60	+0.6
4,106,728	-		Xcc-8004.4290.1	0.85	+1.2
4,106,728	-		Xcc-8004.4290.1	0.85	+1.0