Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4256.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,076,433	+		Xcc-8004.4255.1	0.13	-1.6
4,076,529	+		Xcc-8004.4255.1	0.23	-0.2
4,076,530	-		Xcc-8004.4255.1	0.24	-0.1
4,076,536	+		Xcc-8004.4255.1	0.24	+0.7
4,076,867	+		Xcc-8004.4255.1	0.61	+0.6
4,077,015	+		Xcc-8004.4255.1	0.77	-0.9
4,077,052	-		Xcc-8004.4255.1	0.82	+0.2
4,077,052	-		Xcc-8004.4255.1	0.82	-1.0
4,077,108	+		Xcc-8004.4255.1	0.88	-0.4
4,077,159	+				+1.0
4,077,160	-				-0.4
4,077,160	-				+0.1
4,077,160	-				+0.0
4,077,160	-				-1.1
4,077,441	+		Xcc-8004.4256.1	0.20	-1.2
4,077,501	-		Xcc-8004.4256.1	0.27	+1.3
4,077,501	-		Xcc-8004.4256.1	0.27	-1.4
4,077,723	+		Xcc-8004.4256.1	0.53	-1.0
4,078,012	+		Xcc-8004.4256.1	0.86	-0.8
4,078,012	+		Xcc-8004.4256.1	0.86	+1.1
4,078,079	+				+1.0
4,078,079	+				+0.8
4,078,080	-				+0.0
4,078,080	-				+1.4
4,078,080	-				+1.1
4,078,126	+				-1.9
4,078,126	+				-2.2
4,078,126	+				+1.4
4,078,126	+				-0.8
4,078,127	-				+0.9
4,078,127	-				+0.6
4,078,127	-				+0.1
4,078,127	-				-1.3
4,078,127	-				-0.1
4,078,127	-				-0.3
4,078,127	-				-0.6
4,078,127	-				-0.4
4,078,305	-				-1.1
4,078,319	+				+0.9
4,078,319	+				+0.6
4,078,319	+				+1.3
4,078,319	+				-1.3
4,078,319	+				+1.7
4,078,319	+				-0.2
4,078,319	+				+0.4
4,078,320	-				-1.2
4,078,320	-				+0.7
4,078,320	-				+0.4
4,078,320	-				-0.7
4,078,320	-				-0.3
4,078,373	+				-1.4
4,078,373	+				+0.9
4,078,374	-				+0.1
4,078,433	+		Xcc-8004.4257.1	0.12	+1.1
4,078,650	-		Xcc-8004.4257.1	0.32	-0.4
4,078,650	-		Xcc-8004.4257.1	0.32	-0.5
4,078,655	+		Xcc-8004.4257.1	0.32	+0.1
4,078,655	+		Xcc-8004.4257.1	0.32	+0.4
4,078,655	+		Xcc-8004.4257.1	0.32	-0.3
4,078,655	+		Xcc-8004.4257.1	0.32	-0.1
4,078,656	-		Xcc-8004.4257.1	0.32	+0.5
4,078,656	-		Xcc-8004.4257.1	0.32	-1.2
4,078,656	-		Xcc-8004.4257.1	0.32	-0.9
4,078,656	-		Xcc-8004.4257.1	0.32	-1.1
4,078,656	-		Xcc-8004.4257.1	0.32	+1.4
4,078,656	-		Xcc-8004.4257.1	0.32	+0.1
4,078,656	-		Xcc-8004.4257.1	0.32	-0.1
4,078,656	-		Xcc-8004.4257.1	0.32	+0.4
4,078,684	-		Xcc-8004.4257.1	0.35	+1.0
4,078,684	-		Xcc-8004.4257.1	0.35	-1.1
4,079,000	+		Xcc-8004.4257.1	0.64	+1.1
4,079,000	+		Xcc-8004.4257.1	0.64	-1.3
4,079,000	+		Xcc-8004.4257.1	0.64	+0.0
4,079,000	+		Xcc-8004.4257.1	0.64	+1.2
4,079,001	-		Xcc-8004.4257.1	0.64	+1.1
4,079,001	-		Xcc-8004.4257.1	0.64	-0.8
4,079,001	-		Xcc-8004.4257.1	0.64	+0.9
4,079,001	-		Xcc-8004.4257.1	0.64	-1.4
4,079,001	-		Xcc-8004.4257.1	0.64	-0.7
4,079,001	-		Xcc-8004.4257.1	0.64	+1.7
4,079,061	+		Xcc-8004.4257.1	0.69	+0.7
4,079,062	-		Xcc-8004.4257.1	0.69	+0.6
4,079,096	+		Xcc-8004.4257.1	0.72	+1.6
4,079,097	-		Xcc-8004.4257.1	0.73	+1.5
4,079,099	+		Xcc-8004.4257.1	0.73	-2.4
4,079,099	+		Xcc-8004.4257.1	0.73	+0.9
4,079,108	+		Xcc-8004.4257.1	0.74	-1.2