Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.417.1 and Xcc-8004.418.1 are separated by 137 nucleotides Xcc-8004.418.1 and Xcc-8004.419.1 are separated by 2 nucleotides Xcc-8004.419.1 and Xcc-8004.420.1 overlap by 9 nucleotides Xcc-8004.420.1 and Xcc-8004.421.1 overlap by 41 nucleotides Xcc-8004.421.1 and Xcc-8004.422.1 are separated by 179 nucleotides Xcc-8004.422.1 and Xcc-8004.423.1 overlap by 4 nucleotides Xcc-8004.423.1 and Xcc-8004.424.1 overlap by 26 nucleotides
Xcc-8004.417.1: Xcc-8004.417.1 - hypothetical protein, at 402,726 to 403,127
Xcc-8004.417.1
Xcc-8004.418.1: Xcc-8004.418.1 - hypothetical protein, at 403,265 to 403,720
Xcc-8004.418.1
Xcc-8004.419.1: Xcc-8004.419.1 - putative; ORF located using Glimmer/Genemark, at 403,723 to 404,553
Xcc-8004.419.1
Xcc-8004.420.1: Xcc-8004.420.1 - Xanthomonadin biosynthesis related protein, at 404,545 to 404,637
Xcc-8004.420.1
Xcc-8004.421.1: Xcc-8004.421.1 - Xanthomonadin biosynthesis related protein, at 404,597 to 404,722
Xcc-8004.421.1
Xcc-8004.422.1: Xcc-8004.422.1 - hypothetical protein, at 404,902 to 405,264
Xcc-8004.422.1
Xcc-8004.423.1: Xcc-8004.423.1 - hypothetical protein, at 405,261 to 405,371
Xcc-8004.423.1
Xcc-8004.424.1: Xcc-8004.424.1 - hypothetical protein, at 405,346 to 405,492
Xcc-8004.424.1
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.744 kb on + strand at 402.842 kb on + strand, within Xcc-8004.417.1 at 402.843 kb on - strand, within Xcc-8004.417.1 at 402.845 kb on + strand, within Xcc-8004.417.1 at 402.845 kb on + strand, within Xcc-8004.417.1 at 402.846 kb on - strand, within Xcc-8004.417.1 at 402.846 kb on - strand, within Xcc-8004.417.1 at 403.013 kb on + strand, within Xcc-8004.417.1 at 403.014 kb on - strand, within Xcc-8004.417.1 at 403.110 kb on + strand at 403.221 kb on + strand at 403.221 kb on + strand at 403.251 kb on - strand at 403.258 kb on + strand at 403.259 kb on - strand at 403.259 kb on - strand at 403.260 kb on + strand at 403.260 kb on + strand at 403.261 kb on - strand at 403.373 kb on + strand, within Xcc-8004.418.1 at 403.385 kb on + strand, within Xcc-8004.418.1 at 403.386 kb on - strand, within Xcc-8004.418.1 at 403.386 kb on - strand, within Xcc-8004.418.1 at 403.386 kb on - strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.409 kb on + strand, within Xcc-8004.418.1 at 403.410 kb on - strand, within Xcc-8004.418.1 at 403.410 kb on - strand, within Xcc-8004.418.1 at 403.410 kb on - strand, within Xcc-8004.418.1 at 403.413 kb on + strand, within Xcc-8004.418.1 at 403.413 kb on + strand, within Xcc-8004.418.1 at 403.413 kb on + strand, within Xcc-8004.418.1 at 403.414 kb on - strand, within Xcc-8004.418.1 at 403.414 kb on - strand, within Xcc-8004.418.1 at 403.414 kb on - strand, within Xcc-8004.418.1 at 403.417 kb on + strand, within Xcc-8004.418.1 at 403.418 kb on - strand, within Xcc-8004.418.1 at 403.418 kb on - strand, within Xcc-8004.418.1 at 403.462 kb on + strand, within Xcc-8004.418.1 at 403.464 kb on + strand, within Xcc-8004.418.1 at 403.465 kb on - strand, within Xcc-8004.418.1 at 403.465 kb on - strand, within Xcc-8004.418.1 at 403.465 kb on - strand, within Xcc-8004.418.1 at 403.560 kb on + strand, within Xcc-8004.418.1 at 403.582 kb on + strand, within Xcc-8004.418.1 at 403.582 kb on + strand, within Xcc-8004.418.1 at 403.608 kb on + strand, within Xcc-8004.418.1 at 403.609 kb on - strand, within Xcc-8004.418.1 at 403.720 kb on + strand at 403.720 kb on + strand at 403.721 kb on - strand at 403.724 kb on + strand at 403.725 kb on - strand at 403.725 kb on - strand at 403.728 kb on - strand at 403.728 kb on - strand at 403.728 kb on - strand at 403.734 kb on + strand at 403.735 kb on - strand at 403.735 kb on - strand at 403.735 kb on - strand at 403.742 kb on + strand at 403.804 kb on + strand at 403.805 kb on - strand at 403.829 kb on + strand, within Xcc-8004.419.1 at 403.829 kb on + strand, within Xcc-8004.419.1 at 403.911 kb on + strand, within Xcc-8004.419.1 at 403.912 kb on - strand, within Xcc-8004.419.1 at 403.912 kb on - strand, within Xcc-8004.419.1 at 403.990 kb on - strand, within Xcc-8004.419.1 at 404.071 kb on + strand, within Xcc-8004.419.1 at 404.071 kb on + strand, within Xcc-8004.419.1 at 404.071 kb on + strand, within Xcc-8004.419.1 at 404.072 kb on - strand, within Xcc-8004.419.1 at 404.095 kb on + strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.096 kb on - strand, within Xcc-8004.419.1 at 404.189 kb on + strand, within Xcc-8004.419.1 at 404.396 kb on + strand, within Xcc-8004.419.1 at 404.397 kb on - strand, within Xcc-8004.419.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.681 kb on + strand, within Xcc-8004.421.1 at 404.703 kb on - strand, within Xcc-8004.421.1 at 404.818 kb on + strand at 404.927 kb on + strand at 404.927 kb on + strand at 404.928 kb on - strand at 405.136 kb on + strand, within Xcc-8004.422.1 at 405.162 kb on + strand, within Xcc-8004.422.1 at 405.163 kb on - strand, within Xcc-8004.422.1 at 405.184 kb on - strand, within Xcc-8004.422.1 at 405.184 kb on - strand, within Xcc-8004.422.1 at 405.195 kb on - strand, within Xcc-8004.422.1 at 405.195 kb on - strand, within Xcc-8004.422.1 at 405.201 kb on + strand, within Xcc-8004.422.1 at 405.201 kb on + strand, within Xcc-8004.422.1 at 405.201 kb on + strand, within Xcc-8004.422.1 at 405.202 kb on - strand, within Xcc-8004.422.1 at 405.202 kb on - strand, within Xcc-8004.422.1 at 405.202 kb on - strand, within Xcc-8004.422.1 at 405.213 kb on + strand, within Xcc-8004.422.1 at 405.222 kb on + strand, within Xcc-8004.422.1 at 405.501 kb on + strand at 405.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 402,744 + -2.7 402,842 + Xcc-8004.417.1 0.29 -0.6 402,843 - Xcc-8004.417.1 0.29 -0.3 402,845 + Xcc-8004.417.1 0.30 -0.2 402,845 + Xcc-8004.417.1 0.30 -0.5 402,846 - Xcc-8004.417.1 0.30 +0.5 402,846 - Xcc-8004.417.1 0.30 -0.1 403,013 + Xcc-8004.417.1 0.71 +1.0 403,014 - Xcc-8004.417.1 0.72 -1.2 403,110 + -1.8 403,221 + -0.5 403,221 + +1.0 403,251 - -0.3 403,258 + +0.1 403,259 - +0.5 403,259 - +0.1 403,260 + -3.0 403,260 + -0.1 403,261 - -1.7 403,373 + Xcc-8004.418.1 0.24 +0.1 403,385 + Xcc-8004.418.1 0.26 +0.9 403,386 - Xcc-8004.418.1 0.27 +0.5 403,386 - Xcc-8004.418.1 0.27 -0.0 403,386 - Xcc-8004.418.1 0.27 -1.0 403,409 + Xcc-8004.418.1 0.32 -0.1 403,409 + Xcc-8004.418.1 0.32 +0.5 403,409 + Xcc-8004.418.1 0.32 -1.5 403,409 + Xcc-8004.418.1 0.32 -1.3 403,410 - Xcc-8004.418.1 0.32 -1.2 403,410 - Xcc-8004.418.1 0.32 -0.2 403,410 - Xcc-8004.418.1 0.32 -0.5 403,413 + Xcc-8004.418.1 0.32 -3.2 403,413 + Xcc-8004.418.1 0.32 +0.3 403,413 + Xcc-8004.418.1 0.32 -0.1 403,414 - Xcc-8004.418.1 0.33 -1.4 403,414 - Xcc-8004.418.1 0.33 +0.8 403,414 - Xcc-8004.418.1 0.33 -0.4 403,417 + Xcc-8004.418.1 0.33 +1.3 403,418 - Xcc-8004.418.1 0.34 -0.4 403,418 - Xcc-8004.418.1 0.34 +0.0 403,462 + Xcc-8004.418.1 0.43 +0.9 403,464 + Xcc-8004.418.1 0.44 +0.7 403,465 - Xcc-8004.418.1 0.44 -0.1 403,465 - Xcc-8004.418.1 0.44 +0.3 403,465 - Xcc-8004.418.1 0.44 -0.2 403,560 + Xcc-8004.418.1 0.65 -1.3 403,582 + Xcc-8004.418.1 0.70 +0.2 403,582 + Xcc-8004.418.1 0.70 +0.2 403,608 + Xcc-8004.418.1 0.75 +0.1 403,609 - Xcc-8004.418.1 0.75 -0.4 403,720 + +0.5 403,720 + +1.6 403,721 - -1.3 403,724 + +1.1 403,725 - +0.5 403,725 - -1.5 403,728 - -0.5 403,728 - +0.2 403,728 - -0.2 403,734 + +0.1 403,735 - -2.5 403,735 - +1.4 403,735 - +0.0 403,742 + -0.8 403,804 + +0.5 403,805 - +0.8 403,829 + Xcc-8004.419.1 0.13 +1.5 403,829 + Xcc-8004.419.1 0.13 +0.5 403,911 + Xcc-8004.419.1 0.23 +0.4 403,912 - Xcc-8004.419.1 0.23 +1.1 403,912 - Xcc-8004.419.1 0.23 +0.7 403,990 - Xcc-8004.419.1 0.32 +0.7 404,071 + Xcc-8004.419.1 0.42 +0.6 404,071 + Xcc-8004.419.1 0.42 +1.0 404,071 + Xcc-8004.419.1 0.42 +0.9 404,072 - Xcc-8004.419.1 0.42 -0.1 404,095 + Xcc-8004.419.1 0.45 -0.1 404,096 - Xcc-8004.419.1 0.45 +1.7 404,096 - Xcc-8004.419.1 0.45 -1.5 404,096 - Xcc-8004.419.1 0.45 +0.7 404,096 - Xcc-8004.419.1 0.45 -0.6 404,096 - Xcc-8004.419.1 0.45 -0.9 404,096 - Xcc-8004.419.1 0.45 -1.5 404,189 + Xcc-8004.419.1 0.56 -1.3 404,396 + Xcc-8004.419.1 0.81 +0.2 404,397 - Xcc-8004.419.1 0.81 -0.1 404,681 + Xcc-8004.421.1 0.67 -0.3 404,681 + Xcc-8004.421.1 0.67 +0.8 404,681 + Xcc-8004.421.1 0.67 +2.1 404,681 + Xcc-8004.421.1 0.67 -0.5 404,681 + Xcc-8004.421.1 0.67 +0.1 404,703 - Xcc-8004.421.1 0.84 -0.4 404,818 + -0.7 404,927 + +1.3 404,927 + +1.2 404,928 - -1.8 405,136 + Xcc-8004.422.1 0.64 +0.5 405,162 + Xcc-8004.422.1 0.72 +0.8 405,163 - Xcc-8004.422.1 0.72 +1.6 405,184 - Xcc-8004.422.1 0.78 -3.0 405,184 - Xcc-8004.422.1 0.78 -0.2 405,195 - Xcc-8004.422.1 0.81 +0.3 405,195 - Xcc-8004.422.1 0.81 +0.6 405,201 + Xcc-8004.422.1 0.82 -0.9 405,201 + Xcc-8004.422.1 0.82 -0.7 405,201 + Xcc-8004.422.1 0.82 -1.0 405,202 - Xcc-8004.422.1 0.83 -0.6 405,202 - Xcc-8004.422.1 0.83 +1.3 405,202 - Xcc-8004.422.1 0.83 +0.8 405,213 + Xcc-8004.422.1 0.86 -0.3 405,222 + Xcc-8004.422.1 0.88 +1.5 405,501 + -1.1 405,521 - -0.8
Or see this region's nucleotide sequence