Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3966.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3965.1 and Xcc-8004.3966.1 are separated by 103 nucleotidesXcc-8004.3966.1 and Xcc-8004.3968.1 are separated by 587 nucleotides Xcc-8004.3965.1: Xcc-8004.3965.1 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 3,839,619 to 3,840,566 Xcc-8004.3965.1 Xcc-8004.3966.1: Xcc-8004.3966.1 - hypothetical protein, at 3,840,670 to 3,843,768 Xcc-8004.3966.1 Xcc-8004.3968.1: Xcc-8004.3968.1 - Mobile element protein, at 3,844,356 to 3,844,997 Xcc-8004.3968.1 Position (kb) 3840 3841 3842 3843 3844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3839.953 kb on + strand, within Xcc-8004.3965.1at 3839.954 kb on - strand, within Xcc-8004.3965.1at 3840.070 kb on + strand, within Xcc-8004.3965.1at 3840.070 kb on + strand, within Xcc-8004.3965.1at 3840.070 kb on + strand, within Xcc-8004.3965.1at 3840.071 kb on - strand, within Xcc-8004.3965.1at 3840.071 kb on - strand, within Xcc-8004.3965.1at 3840.071 kb on - strand, within Xcc-8004.3965.1at 3840.345 kb on - strand, within Xcc-8004.3965.1at 3840.570 kb on - strandat 3840.684 kb on + strandat 3840.684 kb on + strandat 3840.685 kb on - strandat 3840.827 kb on + strandat 3840.828 kb on - strandat 3840.927 kb on - strandat 3840.983 kb on + strand, within Xcc-8004.3966.1at 3840.984 kb on - strand, within Xcc-8004.3966.1at 3840.984 kb on - strand, within Xcc-8004.3966.1at 3841.200 kb on + strand, within Xcc-8004.3966.1at 3841.220 kb on + strand, within Xcc-8004.3966.1at 3841.221 kb on - strand, within Xcc-8004.3966.1at 3841.473 kb on - strand, within Xcc-8004.3966.1at 3841.544 kb on + strand, within Xcc-8004.3966.1at 3841.545 kb on - strand, within Xcc-8004.3966.1at 3841.572 kb on - strand, within Xcc-8004.3966.1at 3841.578 kb on - strand, within Xcc-8004.3966.1at 3841.605 kb on - strand, within Xcc-8004.3966.1at 3841.605 kb on - strand, within Xcc-8004.3966.1at 3841.967 kb on + strand, within Xcc-8004.3966.1at 3841.967 kb on + strand, within Xcc-8004.3966.1at 3841.968 kb on - strand, within Xcc-8004.3966.1at 3841.989 kb on - strand, within Xcc-8004.3966.1at 3842.046 kb on - strand, within Xcc-8004.3966.1at 3842.118 kb on - strand, within Xcc-8004.3966.1at 3842.118 kb on - strand, within Xcc-8004.3966.1at 3842.118 kb on - strand, within Xcc-8004.3966.1at 3842.135 kb on + strand, within Xcc-8004.3966.1at 3842.135 kb on + strand, within Xcc-8004.3966.1at 3842.195 kb on + strand, within Xcc-8004.3966.1at 3842.196 kb on - strand, within Xcc-8004.3966.1at 3842.196 kb on - strand, within Xcc-8004.3966.1at 3842.196 kb on - strand, within Xcc-8004.3966.1at 3842.276 kb on + strand, within Xcc-8004.3966.1at 3842.276 kb on + strand, within Xcc-8004.3966.1at 3842.277 kb on - strand, within Xcc-8004.3966.1at 3842.538 kb on - strand, within Xcc-8004.3966.1at 3842.552 kb on + strand, within Xcc-8004.3966.1at 3842.633 kb on + strand, within Xcc-8004.3966.1at 3842.705 kb on + strand, within Xcc-8004.3966.1at 3842.705 kb on + strand, within Xcc-8004.3966.1at 3842.706 kb on - strand, within Xcc-8004.3966.1at 3842.792 kb on + strand, within Xcc-8004.3966.1at 3843.214 kb on + strand, within Xcc-8004.3966.1at 3843.481 kb on - strandat 3843.481 kb on - strandat 3843.487 kb on - strandat 3843.487 kb on - strandat 3843.825 kb on + strandat 3843.860 kb on + strandat 3843.860 kb on + strandat 3843.860 kb on + strandat 3843.861 kb on - strandat 3843.982 kb on + strandat 3844.002 kb on + strandat 3844.165 kb on + strandat 3844.196 kb on + strandat 3844.197 kb on - strandat 3844.393 kb on + strandat 3844.599 kb on + strand, within Xcc-8004.3968.1at 3844.680 kb on - strand, within Xcc-8004.3968.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,839,953 + Xcc-8004.3965.1 0.35 -0.0
3,839,954 - Xcc-8004.3965.1 0.35 +0.9
3,840,070 + Xcc-8004.3965.1 0.48 +1.2
3,840,070 + Xcc-8004.3965.1 0.48 -0.0
3,840,070 + Xcc-8004.3965.1 0.48 +0.0
3,840,071 - Xcc-8004.3965.1 0.48 -0.6
3,840,071 - Xcc-8004.3965.1 0.48 -0.6
3,840,071 - Xcc-8004.3965.1 0.48 +1.2
3,840,345 - Xcc-8004.3965.1 0.77 -0.3
3,840,570 - -2.0
3,840,684 + -1.1
3,840,684 + -0.2
3,840,685 - -0.5
3,840,827 + +1.6
3,840,828 - -1.8
3,840,927 - -1.5
3,840,983 + Xcc-8004.3966.1 0.10 +0.2
3,840,984 - Xcc-8004.3966.1 0.10 -0.3
3,840,984 - Xcc-8004.3966.1 0.10 +0.5
3,841,200 + Xcc-8004.3966.1 0.17 -0.8
3,841,220 + Xcc-8004.3966.1 0.18 -0.8
3,841,221 - Xcc-8004.3966.1 0.18 +1.3
3,841,473 - Xcc-8004.3966.1 0.26 -0.5
3,841,544 + Xcc-8004.3966.1 0.28 -2.4
3,841,545 - Xcc-8004.3966.1 0.28 -0.7
3,841,572 - Xcc-8004.3966.1 0.29 +0.5
3,841,578 - Xcc-8004.3966.1 0.29 -0.2
3,841,605 - Xcc-8004.3966.1 0.30 -0.6
3,841,605 - Xcc-8004.3966.1 0.30 -1.1
3,841,967 + Xcc-8004.3966.1 0.42 -0.8
3,841,967 + Xcc-8004.3966.1 0.42 -0.4
3,841,968 - Xcc-8004.3966.1 0.42 -0.3
3,841,989 - Xcc-8004.3966.1 0.43 +0.1
3,842,046 - Xcc-8004.3966.1 0.44 -1.3
3,842,118 - Xcc-8004.3966.1 0.47 -0.8
3,842,118 - Xcc-8004.3966.1 0.47 -0.7
3,842,118 - Xcc-8004.3966.1 0.47 -1.1
3,842,135 + Xcc-8004.3966.1 0.47 -0.5
3,842,135 + Xcc-8004.3966.1 0.47 -1.1
3,842,195 + Xcc-8004.3966.1 0.49 -0.5
3,842,196 - Xcc-8004.3966.1 0.49 -0.8
3,842,196 - Xcc-8004.3966.1 0.49 +1.1
3,842,196 - Xcc-8004.3966.1 0.49 -1.2
3,842,276 + Xcc-8004.3966.1 0.52 -0.9
3,842,276 + Xcc-8004.3966.1 0.52 +1.9
3,842,277 - Xcc-8004.3966.1 0.52 +0.8
3,842,538 - Xcc-8004.3966.1 0.60 -1.1
3,842,552 + Xcc-8004.3966.1 0.61 +0.2
3,842,633 + Xcc-8004.3966.1 0.63 -2.3
3,842,705 + Xcc-8004.3966.1 0.66 -1.0
3,842,705 + Xcc-8004.3966.1 0.66 -0.3
3,842,706 - Xcc-8004.3966.1 0.66 -0.3
3,842,792 + Xcc-8004.3966.1 0.68 +0.8
3,843,214 + Xcc-8004.3966.1 0.82 -1.3
3,843,481 - -0.9
3,843,481 - +0.5
3,843,487 - +1.5
3,843,487 - -0.9
3,843,825 + -1.2
3,843,860 + +0.1
3,843,860 + +0.3
3,843,860 + +1.1
3,843,861 - -2.5
3,843,982 + -3.0
3,844,002 + -0.8
3,844,165 + -1.1
3,844,196 + -1.5
3,844,197 - +1.4
3,844,393 + +0.7
3,844,599 + Xcc-8004.3968.1 0.38 -0.6
3,844,680 - Xcc-8004.3968.1 0.50 -2.1

Or see this region's nucleotide sequence