Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3964.1 and Xcc-8004.3965.1 are separated by 69 nucleotides Xcc-8004.3965.1 and Xcc-8004.3966.1 are separated by 103 nucleotides
Xcc-8004.3964.1: Xcc-8004.3964.1 - putative; ORF located using Glimmer/Genemark, at 3,838,710 to 3,839,549
Xcc-8004.3964.1
Xcc-8004.3965.1: Xcc-8004.3965.1 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 3,839,619 to 3,840,566
Xcc-8004.3965.1
Xcc-8004.3966.1: Xcc-8004.3966.1 - hypothetical protein, at 3,840,670 to 3,843,768
Xcc-8004.3966.1
Position (kb) 3839
3840
3841 Strain fitness (log2 ratio) -2
-1
0
1 at 3838.712 kb on - strand at 3838.719 kb on - strand at 3838.719 kb on - strand at 3838.749 kb on + strand at 3838.783 kb on - strand at 3838.966 kb on - strand, within Xcc-8004.3964.1 at 3839.953 kb on + strand, within Xcc-8004.3965.1 at 3839.954 kb on - strand, within Xcc-8004.3965.1 at 3840.070 kb on + strand, within Xcc-8004.3965.1 at 3840.070 kb on + strand, within Xcc-8004.3965.1 at 3840.070 kb on + strand, within Xcc-8004.3965.1 at 3840.071 kb on - strand, within Xcc-8004.3965.1 at 3840.071 kb on - strand, within Xcc-8004.3965.1 at 3840.071 kb on - strand, within Xcc-8004.3965.1 at 3840.345 kb on - strand, within Xcc-8004.3965.1 at 3840.570 kb on - strand at 3840.684 kb on + strand at 3840.684 kb on + strand at 3840.685 kb on - strand at 3840.827 kb on + strand at 3840.828 kb on - strand at 3840.927 kb on - strand at 3840.983 kb on + strand, within Xcc-8004.3966.1 at 3840.984 kb on - strand, within Xcc-8004.3966.1 at 3840.984 kb on - strand, within Xcc-8004.3966.1 at 3841.200 kb on + strand, within Xcc-8004.3966.1 at 3841.220 kb on + strand, within Xcc-8004.3966.1 at 3841.221 kb on - strand, within Xcc-8004.3966.1 at 3841.473 kb on - strand, within Xcc-8004.3966.1 at 3841.544 kb on + strand, within Xcc-8004.3966.1 at 3841.545 kb on - strand, within Xcc-8004.3966.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,838,712 - -0.1 3,838,719 - -0.4 3,838,719 - -0.6 3,838,749 + -1.0 3,838,783 - +0.4 3,838,966 - Xcc-8004.3964.1 0.30 -0.1 3,839,953 + Xcc-8004.3965.1 0.35 -0.0 3,839,954 - Xcc-8004.3965.1 0.35 +0.9 3,840,070 + Xcc-8004.3965.1 0.48 +1.2 3,840,070 + Xcc-8004.3965.1 0.48 -0.0 3,840,070 + Xcc-8004.3965.1 0.48 +0.0 3,840,071 - Xcc-8004.3965.1 0.48 -0.6 3,840,071 - Xcc-8004.3965.1 0.48 -0.6 3,840,071 - Xcc-8004.3965.1 0.48 +1.2 3,840,345 - Xcc-8004.3965.1 0.77 -0.3 3,840,570 - -2.0 3,840,684 + -1.1 3,840,684 + -0.2 3,840,685 - -0.5 3,840,827 + +1.6 3,840,828 - -1.8 3,840,927 - -1.5 3,840,983 + Xcc-8004.3966.1 0.10 +0.2 3,840,984 - Xcc-8004.3966.1 0.10 -0.3 3,840,984 - Xcc-8004.3966.1 0.10 +0.5 3,841,200 + Xcc-8004.3966.1 0.17 -0.8 3,841,220 + Xcc-8004.3966.1 0.18 -0.8 3,841,221 - Xcc-8004.3966.1 0.18 +1.3 3,841,473 - Xcc-8004.3966.1 0.26 -0.5 3,841,544 + Xcc-8004.3966.1 0.28 -2.4 3,841,545 - Xcc-8004.3966.1 0.28 -0.7
Or see this region's nucleotide sequence