Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3670.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,549,365	+		Xcc-8004.3669.1	0.62	+0.2
3,549,365	+		Xcc-8004.3669.1	0.62	+0.8
3,549,365	+		Xcc-8004.3669.1	0.62	+0.7
3,549,366	-		Xcc-8004.3669.1	0.62	-0.1
3,549,366	-		Xcc-8004.3669.1	0.62	-2.3
3,549,366	-		Xcc-8004.3669.1	0.62	+1.3
3,549,366	-		Xcc-8004.3669.1	0.62	-0.7
3,549,366	-		Xcc-8004.3669.1	0.62	+0.7
3,549,366	-		Xcc-8004.3669.1	0.62	-0.7
3,549,484	-		Xcc-8004.3669.1	0.71	-0.3
3,549,841	-				-1.3
3,549,901	+				-1.4
3,549,901	+				-0.2
3,549,901	+				-0.1
3,549,901	+				+0.4
3,549,902	-				-2.6
3,549,902	-				+0.4
3,549,902	-				-0.5
3,549,902	-				-1.2
3,549,934	+				+1.2
3,549,992	+				-0.3
3,550,002	-				-1.3
3,550,291	+		Xcc-8004.3670.1	0.36	-1.1
3,550,292	-		Xcc-8004.3670.1	0.37	+0.8
3,550,419	-		Xcc-8004.3670.1	0.54	+2.1
3,550,567	-		Xcc-8004.3670.1	0.75	+0.8
3,550,807	+				-0.8
3,550,807	+				+1.0
3,550,807	+				-1.7
3,550,807	+				-0.9
3,550,807	+				+1.1
3,550,808	-				+1.4
3,550,808	-				-1.8
3,550,808	-				-0.5
3,550,808	-				-0.5
3,550,808	-				+0.8
3,550,808	-				+1.8
3,550,913	+		Xcc-8004.3671.1	0.15	+0.1
3,550,913	+		Xcc-8004.3671.1	0.15	-1.0
3,551,007	+		Xcc-8004.3671.1	0.28	+1.4
3,551,188	+		Xcc-8004.3671.1	0.53	-0.0
3,551,188	+		Xcc-8004.3671.1	0.53	-1.2
3,551,189	-		Xcc-8004.3671.1	0.53	-0.6
3,551,189	-		Xcc-8004.3671.1	0.53	+0.1
3,551,254	+		Xcc-8004.3671.1	0.62	+1.4
3,551,254	+		Xcc-8004.3671.1	0.62	+1.4
3,551,254	+		Xcc-8004.3671.1	0.62	-0.4
3,551,254	+		Xcc-8004.3671.1	0.62	-0.9
3,551,255	-		Xcc-8004.3671.1	0.62	+1.2
3,551,255	-		Xcc-8004.3671.1	0.62	+0.5
3,551,255	-		Xcc-8004.3671.1	0.62	+1.9
3,551,255	-		Xcc-8004.3671.1	0.62	+1.0
3,551,255	-		Xcc-8004.3671.1	0.62	-0.2
3,551,255	-		Xcc-8004.3671.1	0.62	-2.0
3,551,255	-		Xcc-8004.3671.1	0.62	+0.4
3,551,255	-		Xcc-8004.3671.1	0.62	+0.1
3,551,677	+				+0.5
3,551,677	+				+0.9