Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.337.1 and Xcc-8004.338.1 overlap by 4 nucleotides Xcc-8004.338.1 and Xcc-8004.339.1 are separated by 284 nucleotides Xcc-8004.339.1 and Xcc-8004.340.1 are separated by 96 nucleotides Xcc-8004.340.1 and Xcc-8004.341.1 are separated by 20 nucleotides Xcc-8004.341.1 and Xcc-8004.342.1 are separated by 102 nucleotides
Xcc-8004.337.1: Xcc-8004.337.1 - ATPase, AFG1 family, at 325,963 to 327,057
Xcc-8004.337.1
Xcc-8004.338.1: Xcc-8004.338.1 - FIG01213664: hypothetical protein, at 327,054 to 327,734
Xcc-8004.338.1
Xcc-8004.339.1: Xcc-8004.339.1 - Organic hydroperoxide resistance transcriptional regulator, at 328,019 to 328,480
Xcc-8004.339.1
Xcc-8004.340.1: Xcc-8004.340.1 - Organic hydroperoxide resistance protein, at 328,577 to 329,005
Xcc-8004.340.1
Xcc-8004.341.1: Xcc-8004.341.1 - Lipase (EC 3.1.1.3), at 329,026 to 329,337
Xcc-8004.341.1
Xcc-8004.342.1: Xcc-8004.342.1 - Lipase, at 329,440 to 330,057
Xcc-8004.342.1
Position (kb) 328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 327.031 kb on + strand at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.300 kb on + strand, within Xcc-8004.338.1 at 327.301 kb on - strand, within Xcc-8004.338.1 at 327.301 kb on - strand, within Xcc-8004.338.1 at 327.301 kb on - strand, within Xcc-8004.338.1 at 327.537 kb on + strand, within Xcc-8004.338.1 at 327.538 kb on - strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.576 kb on + strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.577 kb on - strand, within Xcc-8004.338.1 at 327.627 kb on + strand, within Xcc-8004.338.1 at 327.627 kb on + strand, within Xcc-8004.338.1 at 327.627 kb on + strand, within Xcc-8004.338.1 at 327.628 kb on - strand, within Xcc-8004.338.1 at 327.657 kb on + strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.658 kb on - strand, within Xcc-8004.338.1 at 327.685 kb on + strand at 327.685 kb on + strand at 327.686 kb on - strand at 327.701 kb on + strand at 327.711 kb on + strand at 327.711 kb on + strand at 327.712 kb on - strand at 327.874 kb on + strand at 327.874 kb on + strand at 327.875 kb on - strand at 327.875 kb on - strand at 327.875 kb on - strand at 327.944 kb on + strand at 327.974 kb on - strand at 328.003 kb on - strand at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.094 kb on + strand, within Xcc-8004.339.1 at 328.095 kb on - strand, within Xcc-8004.339.1 at 328.157 kb on + strand, within Xcc-8004.339.1 at 328.157 kb on + strand, within Xcc-8004.339.1 at 328.166 kb on + strand, within Xcc-8004.339.1 at 328.167 kb on - strand, within Xcc-8004.339.1 at 328.167 kb on - strand, within Xcc-8004.339.1 at 328.232 kb on + strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.233 kb on - strand, within Xcc-8004.339.1 at 328.459 kb on + strand at 328.459 kb on + strand at 328.459 kb on + strand at 328.459 kb on + strand at 328.460 kb on - strand at 328.515 kb on + strand at 328.515 kb on + strand at 328.515 kb on + strand at 328.516 kb on - strand at 328.527 kb on + strand at 328.527 kb on + strand at 328.528 kb on - strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.601 kb on + strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.602 kb on - strand at 328.748 kb on + strand, within Xcc-8004.340.1 at 328.748 kb on + strand, within Xcc-8004.340.1 at 328.749 kb on - strand, within Xcc-8004.340.1 at 328.868 kb on - strand, within Xcc-8004.340.1 at 328.955 kb on + strand, within Xcc-8004.340.1 at 329.335 kb on + strand at 329.335 kb on + strand at 329.336 kb on - strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.344 kb on + strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.345 kb on - strand at 329.443 kb on + strand at 329.443 kb on + strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.444 kb on - strand at 329.452 kb on + strand at 329.452 kb on + strand at 329.452 kb on + strand at 329.453 kb on - strand at 329.453 kb on - strand at 329.453 kb on - strand at 329.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 327,031 + +1.0 327,300 + Xcc-8004.338.1 0.36 +1.7 327,300 + Xcc-8004.338.1 0.36 +0.5 327,300 + Xcc-8004.338.1 0.36 -1.0 327,300 + Xcc-8004.338.1 0.36 -0.6 327,300 + Xcc-8004.338.1 0.36 -0.6 327,301 - Xcc-8004.338.1 0.36 +0.4 327,301 - Xcc-8004.338.1 0.36 -0.4 327,301 - Xcc-8004.338.1 0.36 +0.7 327,537 + Xcc-8004.338.1 0.71 +0.4 327,538 - Xcc-8004.338.1 0.71 +0.1 327,576 + Xcc-8004.338.1 0.77 +0.7 327,576 + Xcc-8004.338.1 0.77 +1.3 327,576 + Xcc-8004.338.1 0.77 +0.9 327,576 + Xcc-8004.338.1 0.77 +0.4 327,576 + Xcc-8004.338.1 0.77 +1.0 327,577 - Xcc-8004.338.1 0.77 -1.0 327,577 - Xcc-8004.338.1 0.77 +0.3 327,577 - Xcc-8004.338.1 0.77 +0.9 327,577 - Xcc-8004.338.1 0.77 +1.0 327,627 + Xcc-8004.338.1 0.84 -0.1 327,627 + Xcc-8004.338.1 0.84 -0.3 327,627 + Xcc-8004.338.1 0.84 -0.5 327,628 - Xcc-8004.338.1 0.84 -0.6 327,657 + Xcc-8004.338.1 0.89 +0.8 327,658 - Xcc-8004.338.1 0.89 +0.1 327,658 - Xcc-8004.338.1 0.89 +0.3 327,658 - Xcc-8004.338.1 0.89 +0.1 327,658 - Xcc-8004.338.1 0.89 -0.1 327,658 - Xcc-8004.338.1 0.89 +0.9 327,685 + -0.6 327,685 + +1.0 327,686 - +0.9 327,701 + -1.8 327,711 + +1.1 327,711 + +2.2 327,712 - -0.4 327,874 + -0.5 327,874 + +0.1 327,875 - +0.3 327,875 - -0.4 327,875 - -2.5 327,944 + +0.1 327,974 - +1.7 328,003 - -1.0 328,094 + Xcc-8004.339.1 0.16 +1.0 328,094 + Xcc-8004.339.1 0.16 +0.8 328,094 + Xcc-8004.339.1 0.16 +2.2 328,094 + Xcc-8004.339.1 0.16 +0.6 328,095 - Xcc-8004.339.1 0.16 +1.2 328,157 + Xcc-8004.339.1 0.30 -1.3 328,157 + Xcc-8004.339.1 0.30 +1.3 328,166 + Xcc-8004.339.1 0.32 +2.0 328,167 - Xcc-8004.339.1 0.32 +0.2 328,167 - Xcc-8004.339.1 0.32 -0.6 328,232 + Xcc-8004.339.1 0.46 +0.6 328,233 - Xcc-8004.339.1 0.46 -0.2 328,233 - Xcc-8004.339.1 0.46 -1.7 328,233 - Xcc-8004.339.1 0.46 +1.5 328,233 - Xcc-8004.339.1 0.46 -1.5 328,233 - Xcc-8004.339.1 0.46 -1.1 328,233 - Xcc-8004.339.1 0.46 +0.1 328,459 + -0.7 328,459 + +1.4 328,459 + +0.3 328,459 + +0.1 328,460 - +0.8 328,515 + -1.0 328,515 + +0.5 328,515 + -1.2 328,516 - -0.9 328,527 + +1.2 328,527 + -1.2 328,528 - -1.3 328,601 + +1.4 328,601 + -0.6 328,601 + -0.3 328,601 + +0.3 328,601 + -0.1 328,601 + -1.0 328,601 + -0.1 328,601 + -1.6 328,602 - -1.3 328,602 - -0.4 328,602 - -1.3 328,602 - +0.7 328,602 - +0.4 328,748 + Xcc-8004.340.1 0.40 -1.6 328,748 + Xcc-8004.340.1 0.40 -0.2 328,749 - Xcc-8004.340.1 0.40 -1.5 328,868 - Xcc-8004.340.1 0.68 -0.2 328,955 + Xcc-8004.340.1 0.88 +1.7 329,335 + -0.9 329,335 + +0.0 329,336 - +0.5 329,344 + +0.2 329,344 + +1.9 329,344 + +0.1 329,344 + -2.0 329,344 + -0.3 329,344 + -0.1 329,344 + -0.2 329,344 + -0.8 329,344 + -0.9 329,344 + -0.6 329,345 - -0.4 329,345 - +1.4 329,345 - +0.3 329,345 - +0.2 329,345 - -0.1 329,345 - +0.8 329,345 - +0.2 329,345 - -1.0 329,345 - -0.6 329,345 - -1.1 329,345 - -2.8 329,443 + -1.2 329,443 + -0.4 329,444 - +1.0 329,444 - -1.1 329,444 - +0.5 329,444 - -0.4 329,444 - +1.2 329,444 - -0.9 329,444 - -0.5 329,444 - +1.1 329,444 - -0.8 329,444 - -0.3 329,444 - -0.1 329,444 - +0.6 329,444 - -1.2 329,444 - +0.1 329,444 - -0.6 329,452 + +0.2 329,452 + +0.5 329,452 + +0.4 329,453 - -0.5 329,453 - -0.2 329,453 - -0.7 329,453 - -0.4
Or see this region's nucleotide sequence