Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3235.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3234.1 and Xcc-8004.3235.1 are separated by 58 nucleotidesXcc-8004.3235.1 and Xcc-8004.3236.1 are separated by 39 nucleotides Xcc-8004.3234.1: Xcc-8004.3234.1 - hypothetical protein, at 3,142,126 to 3,142,941 Xcc-8004.3234.1 Xcc-8004.3235.1: Xcc-8004.3235.1 - FIG01214195: hypothetical protein, at 3,143,000 to 3,143,647 Xcc-8004.3235.1 Xcc-8004.3236.1: Xcc-8004.3236.1 - FIG01211760: hypothetical protein, at 3,143,687 to 3,147,703 Xcc-8004.3236.1 Position (kb) 3142 3143 3144Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3142.191 kb on + strandat 3142.191 kb on + strandat 3142.192 kb on - strandat 3142.192 kb on - strandat 3142.212 kb on + strand, within Xcc-8004.3234.1at 3142.232 kb on - strand, within Xcc-8004.3234.1at 3142.254 kb on + strand, within Xcc-8004.3234.1at 3142.254 kb on + strand, within Xcc-8004.3234.1at 3142.254 kb on + strand, within Xcc-8004.3234.1at 3142.255 kb on - strand, within Xcc-8004.3234.1at 3142.255 kb on - strand, within Xcc-8004.3234.1at 3142.255 kb on - strand, within Xcc-8004.3234.1at 3142.268 kb on - strand, within Xcc-8004.3234.1at 3142.306 kb on + strand, within Xcc-8004.3234.1at 3142.306 kb on + strand, within Xcc-8004.3234.1at 3142.306 kb on + strand, within Xcc-8004.3234.1at 3142.307 kb on - strand, within Xcc-8004.3234.1at 3142.307 kb on - strand, within Xcc-8004.3234.1at 3142.482 kb on + strand, within Xcc-8004.3234.1at 3142.483 kb on - strand, within Xcc-8004.3234.1at 3142.483 kb on - strand, within Xcc-8004.3234.1at 3142.517 kb on + strand, within Xcc-8004.3234.1at 3142.518 kb on - strand, within Xcc-8004.3234.1at 3142.549 kb on - strand, within Xcc-8004.3234.1at 3142.555 kb on + strand, within Xcc-8004.3234.1at 3142.556 kb on - strand, within Xcc-8004.3234.1at 3142.556 kb on - strand, within Xcc-8004.3234.1at 3142.605 kb on + strand, within Xcc-8004.3234.1at 3142.606 kb on - strand, within Xcc-8004.3234.1at 3142.616 kb on + strand, within Xcc-8004.3234.1at 3142.617 kb on - strand, within Xcc-8004.3234.1at 3142.624 kb on + strand, within Xcc-8004.3234.1at 3142.625 kb on - strand, within Xcc-8004.3234.1at 3142.632 kb on + strand, within Xcc-8004.3234.1at 3142.633 kb on - strand, within Xcc-8004.3234.1at 3142.633 kb on - strand, within Xcc-8004.3234.1at 3142.666 kb on + strand, within Xcc-8004.3234.1at 3142.666 kb on + strand, within Xcc-8004.3234.1at 3142.666 kb on + strand, within Xcc-8004.3234.1at 3142.666 kb on + strand, within Xcc-8004.3234.1at 3142.667 kb on - strand, within Xcc-8004.3234.1at 3142.667 kb on - strand, within Xcc-8004.3234.1at 3142.722 kb on + strand, within Xcc-8004.3234.1at 3142.722 kb on + strand, within Xcc-8004.3234.1at 3142.722 kb on + strand, within Xcc-8004.3234.1at 3142.722 kb on + strand, within Xcc-8004.3234.1at 3142.722 kb on + strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.723 kb on - strand, within Xcc-8004.3234.1at 3142.726 kb on + strand, within Xcc-8004.3234.1at 3142.774 kb on + strand, within Xcc-8004.3234.1at 3142.775 kb on - strand, within Xcc-8004.3234.1at 3142.775 kb on - strand, within Xcc-8004.3234.1at 3142.833 kb on + strand, within Xcc-8004.3234.1at 3142.833 kb on + strand, within Xcc-8004.3234.1at 3142.833 kb on + strand, within Xcc-8004.3234.1at 3142.833 kb on + strand, within Xcc-8004.3234.1at 3142.833 kb on + strand, within Xcc-8004.3234.1at 3142.833 kb on + strand, within Xcc-8004.3234.1at 3142.834 kb on - strand, within Xcc-8004.3234.1at 3142.834 kb on - strand, within Xcc-8004.3234.1at 3142.834 kb on - strand, within Xcc-8004.3234.1at 3142.834 kb on - strand, within Xcc-8004.3234.1at 3142.834 kb on - strand, within Xcc-8004.3234.1at 3142.850 kb on + strand, within Xcc-8004.3234.1at 3142.850 kb on + strand, within Xcc-8004.3234.1at 3142.850 kb on + strand, within Xcc-8004.3234.1at 3142.851 kb on - strand, within Xcc-8004.3234.1at 3142.851 kb on - strand, within Xcc-8004.3234.1at 3142.851 kb on - strand, within Xcc-8004.3234.1at 3142.884 kb on + strandat 3142.885 kb on - strandat 3142.886 kb on + strandat 3142.899 kb on + strandat 3142.899 kb on + strandat 3142.900 kb on - strandat 3142.900 kb on - strandat 3143.037 kb on + strandat 3143.037 kb on + strandat 3143.038 kb on - strandat 3143.038 kb on - strandat 3143.111 kb on + strand, within Xcc-8004.3235.1at 3143.111 kb on + strand, within Xcc-8004.3235.1at 3143.112 kb on - strand, within Xcc-8004.3235.1at 3143.112 kb on - strand, within Xcc-8004.3235.1at 3143.112 kb on - strand, within Xcc-8004.3235.1at 3143.139 kb on + strand, within Xcc-8004.3235.1at 3143.139 kb on + strand, within Xcc-8004.3235.1at 3143.140 kb on - strand, within Xcc-8004.3235.1at 3143.140 kb on - strand, within Xcc-8004.3235.1at 3143.140 kb on - strand, within Xcc-8004.3235.1at 3143.202 kb on + strand, within Xcc-8004.3235.1at 3143.202 kb on + strand, within Xcc-8004.3235.1at 3143.202 kb on + strand, within Xcc-8004.3235.1at 3143.203 kb on - strand, within Xcc-8004.3235.1at 3143.203 kb on - strand, within Xcc-8004.3235.1at 3143.222 kb on + strand, within Xcc-8004.3235.1at 3143.222 kb on + strand, within Xcc-8004.3235.1at 3143.223 kb on - strand, within Xcc-8004.3235.1at 3143.258 kb on - strand, within Xcc-8004.3235.1at 3143.258 kb on - strand, within Xcc-8004.3235.1at 3143.258 kb on - strand, within Xcc-8004.3235.1at 3143.417 kb on + strand, within Xcc-8004.3235.1at 3143.559 kb on - strand, within Xcc-8004.3235.1at 3143.657 kb on + strandat 3143.658 kb on - strandat 3143.689 kb on - strandat 3144.009 kb on + strandat 3144.009 kb on + strandat 3144.010 kb on - strandat 3144.113 kb on + strand, within Xcc-8004.3236.1at 3144.113 kb on + strand, within Xcc-8004.3236.1at 3144.113 kb on + strand, within Xcc-8004.3236.1at 3144.113 kb on + strand, within Xcc-8004.3236.1at 3144.113 kb on + strand, within Xcc-8004.3236.1at 3144.114 kb on - strand, within Xcc-8004.3236.1at 3144.114 kb on - strand, within Xcc-8004.3236.1at 3144.114 kb on - strand, within Xcc-8004.3236.1at 3144.114 kb on - strand, within Xcc-8004.3236.1at 3144.237 kb on + strand, within Xcc-8004.3236.1at 3144.238 kb on - strand, within Xcc-8004.3236.1at 3144.238 kb on - strand, within Xcc-8004.3236.1at 3144.258 kb on + strand, within Xcc-8004.3236.1at 3144.258 kb on + strand, within Xcc-8004.3236.1at 3144.259 kb on - strand, within Xcc-8004.3236.1at 3144.497 kb on + strand, within Xcc-8004.3236.1at 3144.497 kb on + strand, within Xcc-8004.3236.1at 3144.498 kb on - strand, within Xcc-8004.3236.1at 3144.587 kb on - strand, within Xcc-8004.3236.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
3,142,191 + -0.7
3,142,191 + +1.3
3,142,192 - -0.2
3,142,192 - +0.2
3,142,212 + Xcc-8004.3234.1 0.11 -0.7
3,142,232 - Xcc-8004.3234.1 0.13 +1.4
3,142,254 + Xcc-8004.3234.1 0.16 +1.1
3,142,254 + Xcc-8004.3234.1 0.16 -0.5
3,142,254 + Xcc-8004.3234.1 0.16 -1.6
3,142,255 - Xcc-8004.3234.1 0.16 -0.2
3,142,255 - Xcc-8004.3234.1 0.16 +1.6
3,142,255 - Xcc-8004.3234.1 0.16 -1.9
3,142,268 - Xcc-8004.3234.1 0.17 +1.1
3,142,306 + Xcc-8004.3234.1 0.22 +0.2
3,142,306 + Xcc-8004.3234.1 0.22 +1.9
3,142,306 + Xcc-8004.3234.1 0.22 -0.6
3,142,307 - Xcc-8004.3234.1 0.22 -0.8
3,142,307 - Xcc-8004.3234.1 0.22 -0.1
3,142,482 + Xcc-8004.3234.1 0.44 -0.6
3,142,483 - Xcc-8004.3234.1 0.44 +1.1
3,142,483 - Xcc-8004.3234.1 0.44 +1.7
3,142,517 + Xcc-8004.3234.1 0.48 -0.1
3,142,518 - Xcc-8004.3234.1 0.48 +0.9
3,142,549 - Xcc-8004.3234.1 0.52 +1.3
3,142,555 + Xcc-8004.3234.1 0.53 -0.1
3,142,556 - Xcc-8004.3234.1 0.53 -0.6
3,142,556 - Xcc-8004.3234.1 0.53 +1.2
3,142,605 + Xcc-8004.3234.1 0.59 +0.7
3,142,606 - Xcc-8004.3234.1 0.59 -0.9
3,142,616 + Xcc-8004.3234.1 0.60 -0.1
3,142,617 - Xcc-8004.3234.1 0.60 +0.5
3,142,624 + Xcc-8004.3234.1 0.61 -0.3
3,142,625 - Xcc-8004.3234.1 0.61 +0.4
3,142,632 + Xcc-8004.3234.1 0.62 +0.1
3,142,633 - Xcc-8004.3234.1 0.62 -0.5
3,142,633 - Xcc-8004.3234.1 0.62 +0.2
3,142,666 + Xcc-8004.3234.1 0.66 -0.7
3,142,666 + Xcc-8004.3234.1 0.66 -0.6
3,142,666 + Xcc-8004.3234.1 0.66 +0.6
3,142,666 + Xcc-8004.3234.1 0.66 -1.9
3,142,667 - Xcc-8004.3234.1 0.66 -1.6
3,142,667 - Xcc-8004.3234.1 0.66 -0.3
3,142,722 + Xcc-8004.3234.1 0.73 +0.6
3,142,722 + Xcc-8004.3234.1 0.73 -0.4
3,142,722 + Xcc-8004.3234.1 0.73 +0.7
3,142,722 + Xcc-8004.3234.1 0.73 +0.8
3,142,722 + Xcc-8004.3234.1 0.73 -0.6
3,142,723 - Xcc-8004.3234.1 0.73 +1.4
3,142,723 - Xcc-8004.3234.1 0.73 +0.3
3,142,723 - Xcc-8004.3234.1 0.73 -0.4
3,142,723 - Xcc-8004.3234.1 0.73 -0.2
3,142,723 - Xcc-8004.3234.1 0.73 -0.2
3,142,723 - Xcc-8004.3234.1 0.73 -0.3
3,142,723 - Xcc-8004.3234.1 0.73 +0.1
3,142,723 - Xcc-8004.3234.1 0.73 -2.1
3,142,723 - Xcc-8004.3234.1 0.73 -0.9
3,142,723 - Xcc-8004.3234.1 0.73 -1.2
3,142,723 - Xcc-8004.3234.1 0.73 +0.9
3,142,726 + Xcc-8004.3234.1 0.74 -1.8
3,142,774 + Xcc-8004.3234.1 0.79 -0.8
3,142,775 - Xcc-8004.3234.1 0.80 -1.4
3,142,775 - Xcc-8004.3234.1 0.80 +0.8
3,142,833 + Xcc-8004.3234.1 0.87 -0.6
3,142,833 + Xcc-8004.3234.1 0.87 +0.4
3,142,833 + Xcc-8004.3234.1 0.87 -0.9
3,142,833 + Xcc-8004.3234.1 0.87 +0.7
3,142,833 + Xcc-8004.3234.1 0.87 -0.9
3,142,833 + Xcc-8004.3234.1 0.87 +0.6
3,142,834 - Xcc-8004.3234.1 0.87 -0.4
3,142,834 - Xcc-8004.3234.1 0.87 -0.1
3,142,834 - Xcc-8004.3234.1 0.87 -1.7
3,142,834 - Xcc-8004.3234.1 0.87 -2.8
3,142,834 - Xcc-8004.3234.1 0.87 +0.2
3,142,850 + Xcc-8004.3234.1 0.89 +0.5
3,142,850 + Xcc-8004.3234.1 0.89 +1.2
3,142,850 + Xcc-8004.3234.1 0.89 -0.1
3,142,851 - Xcc-8004.3234.1 0.89 +0.2
3,142,851 - Xcc-8004.3234.1 0.89 +0.6
3,142,851 - Xcc-8004.3234.1 0.89 +0.3
3,142,884 + +0.2
3,142,885 - -2.2
3,142,886 + +0.2
3,142,899 + -0.5
3,142,899 + -0.5
3,142,900 - -0.7
3,142,900 - +0.9
3,143,037 + -0.4
3,143,037 + -0.6
3,143,038 - -0.6
3,143,038 - +0.5
3,143,111 + Xcc-8004.3235.1 0.17 +1.1
3,143,111 + Xcc-8004.3235.1 0.17 +1.1
3,143,112 - Xcc-8004.3235.1 0.17 -0.3
3,143,112 - Xcc-8004.3235.1 0.17 -0.3
3,143,112 - Xcc-8004.3235.1 0.17 +1.2
3,143,139 + Xcc-8004.3235.1 0.21 +0.6
3,143,139 + Xcc-8004.3235.1 0.21 +1.1
3,143,140 - Xcc-8004.3235.1 0.22 +0.4
3,143,140 - Xcc-8004.3235.1 0.22 -0.0
3,143,140 - Xcc-8004.3235.1 0.22 -0.9
3,143,202 + Xcc-8004.3235.1 0.31 +0.0
3,143,202 + Xcc-8004.3235.1 0.31 -0.6
3,143,202 + Xcc-8004.3235.1 0.31 +0.7
3,143,203 - Xcc-8004.3235.1 0.31 +1.3
3,143,203 - Xcc-8004.3235.1 0.31 -0.0
3,143,222 + Xcc-8004.3235.1 0.34 +0.9
3,143,222 + Xcc-8004.3235.1 0.34 -1.0
3,143,223 - Xcc-8004.3235.1 0.34 +1.4
3,143,258 - Xcc-8004.3235.1 0.40 -0.8
3,143,258 - Xcc-8004.3235.1 0.40 +1.5
3,143,258 - Xcc-8004.3235.1 0.40 +0.3
3,143,417 + Xcc-8004.3235.1 0.64 -1.6
3,143,559 - Xcc-8004.3235.1 0.86 +2.0
3,143,657 + +1.1
3,143,658 - -0.9
3,143,689 - -0.1
3,144,009 + +0.0
3,144,009 + -0.1
3,144,010 - +0.9
3,144,113 + Xcc-8004.3236.1 0.11 -1.3
3,144,113 + Xcc-8004.3236.1 0.11 +0.9
3,144,113 + Xcc-8004.3236.1 0.11 +1.4
3,144,113 + Xcc-8004.3236.1 0.11 -1.4
3,144,113 + Xcc-8004.3236.1 0.11 -1.2
3,144,114 - Xcc-8004.3236.1 0.11 +1.0
3,144,114 - Xcc-8004.3236.1 0.11 -1.8
3,144,114 - Xcc-8004.3236.1 0.11 -0.4
3,144,114 - Xcc-8004.3236.1 0.11 -3.0
3,144,237 + Xcc-8004.3236.1 0.14 -0.8
3,144,238 - Xcc-8004.3236.1 0.14 +0.5
3,144,238 - Xcc-8004.3236.1 0.14 -0.9
3,144,258 + Xcc-8004.3236.1 0.14 +0.7
3,144,258 + Xcc-8004.3236.1 0.14 +0.7
3,144,259 - Xcc-8004.3236.1 0.14 -1.0
3,144,497 + Xcc-8004.3236.1 0.20 +1.0
3,144,497 + Xcc-8004.3236.1 0.20 +0.9
3,144,498 - Xcc-8004.3236.1 0.20 -2.7
3,144,587 - Xcc-8004.3236.1 0.22 +0.6

Or see this region's nucleotide sequence