Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3170.1 and Xcc-8004.3171.1 are separated by 10 nucleotides Xcc-8004.3171.1 and Xcc-8004.3172.1 are separated by 1 nucleotides Xcc-8004.3172.1 and Xcc-8004.3173.1 overlap by 4 nucleotides
Xcc-8004.3170.1: Xcc-8004.3170.1 - FIG01210267: hypothetical protein, at 3,090,553 to 3,091,434
Xcc-8004.3170.1
Xcc-8004.3171.1: Xcc-8004.3171.1 - FIG01213081: hypothetical protein, at 3,091,445 to 3,092,581
Xcc-8004.3171.1
Xcc-8004.3172.1: Xcc-8004.3172.1 - glycosyl transferase, at 3,092,583 to 3,093,521
Xcc-8004.3172.1
Xcc-8004.3173.1: Xcc-8004.3173.1 - lipopolysaccharide biosynthesis protein, at 3,093,518 to 3,094,771
Xcc-8004.3173.1
Position (kb) 3091
3092
3093 Strain fitness (log2 ratio) -1
0
1
2 at 3090.622 kb on + strand at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.701 kb on + strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.702 kb on - strand, within Xcc-8004.3170.1 at 3090.729 kb on - strand, within Xcc-8004.3170.1 at 3090.734 kb on + strand, within Xcc-8004.3170.1 at 3090.735 kb on - strand, within Xcc-8004.3170.1 at 3091.385 kb on + strand at 3091.385 kb on + strand at 3091.582 kb on - strand, within Xcc-8004.3171.1 at 3091.662 kb on + strand, within Xcc-8004.3171.1 at 3091.663 kb on - strand, within Xcc-8004.3171.1 at 3091.834 kb on - strand, within Xcc-8004.3171.1 at 3091.881 kb on + strand, within Xcc-8004.3171.1 at 3092.129 kb on + strand, within Xcc-8004.3171.1 at 3092.130 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.260 kb on - strand, within Xcc-8004.3171.1 at 3092.499 kb on + strand at 3092.499 kb on + strand at 3092.499 kb on + strand at 3092.500 kb on - strand at 3092.508 kb on + strand at 3092.508 kb on + strand at 3092.544 kb on - strand at 3092.544 kb on - strand at 3092.584 kb on + strand at 3092.585 kb on - strand at 3092.638 kb on + strand at 3092.796 kb on + strand, within Xcc-8004.3172.1 at 3092.797 kb on - strand, within Xcc-8004.3172.1 at 3092.905 kb on + strand, within Xcc-8004.3172.1 at 3092.963 kb on + strand, within Xcc-8004.3172.1 at 3092.963 kb on + strand, within Xcc-8004.3172.1 at 3092.964 kb on - strand, within Xcc-8004.3172.1 at 3093.005 kb on + strand, within Xcc-8004.3172.1 at 3093.005 kb on + strand, within Xcc-8004.3172.1 at 3093.043 kb on + strand, within Xcc-8004.3172.1 at 3093.144 kb on - strand, within Xcc-8004.3172.1 at 3093.144 kb on - strand, within Xcc-8004.3172.1 at 3093.156 kb on + strand, within Xcc-8004.3172.1 at 3093.157 kb on - strand, within Xcc-8004.3172.1 at 3093.164 kb on - strand, within Xcc-8004.3172.1 at 3093.199 kb on + strand, within Xcc-8004.3172.1 at 3093.570 kb on + strand at 3093.579 kb on + strand at 3093.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,090,622 + +0.7 3,090,701 + Xcc-8004.3170.1 0.17 -0.6 3,090,701 + Xcc-8004.3170.1 0.17 -1.5 3,090,701 + Xcc-8004.3170.1 0.17 +1.0 3,090,701 + Xcc-8004.3170.1 0.17 -0.6 3,090,701 + Xcc-8004.3170.1 0.17 +0.1 3,090,701 + Xcc-8004.3170.1 0.17 -1.6 3,090,701 + Xcc-8004.3170.1 0.17 +1.1 3,090,702 - Xcc-8004.3170.1 0.17 -0.8 3,090,702 - Xcc-8004.3170.1 0.17 +0.8 3,090,702 - Xcc-8004.3170.1 0.17 +2.3 3,090,702 - Xcc-8004.3170.1 0.17 -0.1 3,090,729 - Xcc-8004.3170.1 0.20 -1.0 3,090,734 + Xcc-8004.3170.1 0.21 -1.0 3,090,735 - Xcc-8004.3170.1 0.21 +0.1 3,091,385 + +0.8 3,091,385 + -0.7 3,091,582 - Xcc-8004.3171.1 0.12 +1.1 3,091,662 + Xcc-8004.3171.1 0.19 -0.9 3,091,663 - Xcc-8004.3171.1 0.19 +0.8 3,091,834 - Xcc-8004.3171.1 0.34 -1.0 3,091,881 + Xcc-8004.3171.1 0.38 -1.0 3,092,129 + Xcc-8004.3171.1 0.60 +0.0 3,092,130 - Xcc-8004.3171.1 0.60 +0.8 3,092,260 - Xcc-8004.3171.1 0.72 -1.0 3,092,260 - Xcc-8004.3171.1 0.72 -0.6 3,092,260 - Xcc-8004.3171.1 0.72 -0.3 3,092,499 + -1.5 3,092,499 + -1.6 3,092,499 + -0.8 3,092,500 - -0.4 3,092,508 + -0.5 3,092,508 + -0.3 3,092,544 - +1.0 3,092,544 - +0.6 3,092,584 + +0.9 3,092,585 - +0.3 3,092,638 + +0.8 3,092,796 + Xcc-8004.3172.1 0.23 -0.5 3,092,797 - Xcc-8004.3172.1 0.23 +0.0 3,092,905 + Xcc-8004.3172.1 0.34 -1.7 3,092,963 + Xcc-8004.3172.1 0.40 -0.6 3,092,963 + Xcc-8004.3172.1 0.40 +1.4 3,092,964 - Xcc-8004.3172.1 0.41 -0.1 3,093,005 + Xcc-8004.3172.1 0.45 +0.4 3,093,005 + Xcc-8004.3172.1 0.45 +0.6 3,093,043 + Xcc-8004.3172.1 0.49 -0.9 3,093,144 - Xcc-8004.3172.1 0.60 -0.4 3,093,144 - Xcc-8004.3172.1 0.60 -0.1 3,093,156 + Xcc-8004.3172.1 0.61 +0.1 3,093,157 - Xcc-8004.3172.1 0.61 -0.0 3,093,164 - Xcc-8004.3172.1 0.62 -0.9 3,093,199 + Xcc-8004.3172.1 0.66 -0.3 3,093,570 + +1.4 3,093,579 + -0.2 3,093,579 + -0.6
Or see this region's nucleotide sequence