Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3021.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,950,967	+		Xcc-8004.3019.1	0.47	+1.2
2,950,968	-		Xcc-8004.3019.1	0.47	+1.5
2,950,968	-		Xcc-8004.3019.1	0.47	+0.5
2,950,974	+		Xcc-8004.3019.1	0.48	+0.4
2,950,975	-		Xcc-8004.3019.1	0.48	+1.3
2,950,997	+		Xcc-8004.3019.1	0.51	+0.7
2,950,997	+		Xcc-8004.3019.1	0.51	-0.7
2,950,997	+		Xcc-8004.3019.1	0.51	+0.8
2,950,998	-		Xcc-8004.3019.1	0.51	-0.8
2,950,998	-		Xcc-8004.3019.1	0.51	-2.1
2,951,006	+		Xcc-8004.3019.1	0.52	+0.7
2,951,006	+		Xcc-8004.3019.1	0.52	-0.9
2,951,006	+		Xcc-8004.3019.1	0.52	+0.6
2,951,006	+		Xcc-8004.3019.1	0.52	+0.1
2,951,006	+		Xcc-8004.3019.1	0.52	+1.3
2,951,007	-		Xcc-8004.3019.1	0.52	+0.3
2,951,007	-		Xcc-8004.3019.1	0.52	-0.5
2,951,007	-		Xcc-8004.3019.1	0.52	+0.4
2,951,007	-		Xcc-8004.3019.1	0.52	-1.4
2,951,104	-		Xcc-8004.3019.1	0.66	+0.4
2,951,111	+		Xcc-8004.3019.1	0.67	+0.0
2,951,122	+		Xcc-8004.3019.1	0.69	-0.2
2,951,122	+		Xcc-8004.3019.1	0.69	+0.0
2,951,123	-		Xcc-8004.3019.1	0.69	-0.3
2,951,123	-		Xcc-8004.3019.1	0.69	+0.1
2,951,176	+		Xcc-8004.3019.1	0.76	-1.4
2,951,176	+		Xcc-8004.3019.1	0.76	-2.0
2,951,177	-		Xcc-8004.3019.1	0.76	-1.3
2,951,177	-		Xcc-8004.3019.1	0.76	-0.3
2,951,177	-		Xcc-8004.3019.1	0.76	+1.3
2,951,177	-		Xcc-8004.3019.1	0.76	+0.5
2,951,232	+		Xcc-8004.3019.1	0.84	-1.2
2,951,232	+		Xcc-8004.3019.1	0.84	-2.1
2,951,233	-		Xcc-8004.3019.1	0.84	-1.6
2,951,264	-		Xcc-8004.3019.1	0.89	-0.5
2,951,296	-				+0.4
2,951,324	+				-2.1
2,951,325	-				-0.7
2,951,325	-				-1.2
2,951,325	-				-0.0
2,951,473	+		Xcc-8004.3020.1	0.30	-1.1
2,951,473	+		Xcc-8004.3020.1	0.30	-0.3
2,951,475	+		Xcc-8004.3020.1	0.30	+0.6
2,951,475	+		Xcc-8004.3020.1	0.30	+1.0
2,951,476	-		Xcc-8004.3020.1	0.30	-0.1
2,951,498	+		Xcc-8004.3020.1	0.34	-0.6
2,951,498	+		Xcc-8004.3020.1	0.34	+2.1
2,951,513	+		Xcc-8004.3020.1	0.37	-2.4
2,951,513	+		Xcc-8004.3020.1	0.37	-0.3
2,951,514	-		Xcc-8004.3020.1	0.37	-0.1
2,951,530	+		Xcc-8004.3020.1	0.40	+1.0
2,951,560	+		Xcc-8004.3020.1	0.46	-0.4
2,951,560	+		Xcc-8004.3020.1	0.46	+0.4
2,951,625	+		Xcc-8004.3020.1	0.58	+0.9
2,951,626	-		Xcc-8004.3020.1	0.58	-1.9
2,951,626	-		Xcc-8004.3020.1	0.58	-1.1
2,951,771	+		Xcc-8004.3020.1	0.85	-1.6
2,951,771	+		Xcc-8004.3020.1	0.85	-1.5
2,951,810	-				-0.8
2,951,810	-				-0.3
2,951,823	+				+0.6
2,951,823	+				+0.1
2,951,824	-				+0.7
2,951,824	-				+0.9
2,951,899	+				+0.7
2,951,899	+				+0.7
2,951,899	+				+1.0
2,951,899	+				-1.8
2,951,900	-				-1.2
2,951,900	-				+0.3
2,951,987	+				+0.6
2,951,988	-				-0.4
2,952,064	+		Xcc-8004.3021.1	0.15	+0.2
2,952,064	+		Xcc-8004.3021.1	0.15	-1.8
2,952,064	+		Xcc-8004.3021.1	0.15	-2.8
2,952,064	+		Xcc-8004.3021.1	0.15	-0.1
2,952,064	+		Xcc-8004.3021.1	0.15	-0.6
2,952,065	-		Xcc-8004.3021.1	0.15	-0.4
2,952,065	-		Xcc-8004.3021.1	0.15	-0.3
2,952,065	-		Xcc-8004.3021.1	0.15	-1.4
2,952,078	-		Xcc-8004.3021.1	0.17	+0.7
2,952,099	+		Xcc-8004.3021.1	0.20	-0.6
2,952,099	+		Xcc-8004.3021.1	0.20	-3.0
2,952,100	-		Xcc-8004.3021.1	0.21	+1.4
2,952,100	-		Xcc-8004.3021.1	0.21	+0.0
2,952,105	+		Xcc-8004.3021.1	0.21	+0.3
2,952,105	+		Xcc-8004.3021.1	0.21	+0.4
2,952,106	-		Xcc-8004.3021.1	0.22	-0.6
2,952,106	-		Xcc-8004.3021.1	0.22	-0.6
2,952,106	-		Xcc-8004.3021.1	0.22	-0.7
2,952,162	+		Xcc-8004.3021.1	0.30	+1.4
2,952,162	+		Xcc-8004.3021.1	0.30	-1.3
2,952,162	+		Xcc-8004.3021.1	0.30	-0.3
2,952,163	-		Xcc-8004.3021.1	0.30	-0.3
2,952,411	-		Xcc-8004.3021.1	0.68	-0.3
2,952,411	-		Xcc-8004.3021.1	0.68	-1.4
2,952,433	+		Xcc-8004.3021.1	0.71	+1.3
2,952,434	-		Xcc-8004.3021.1	0.71	+0.4
2,952,523	+		Xcc-8004.3021.1	0.85	-1.0
2,952,545	+		Xcc-8004.3021.1	0.88	+1.0
2,952,545	+		Xcc-8004.3021.1	0.88	+0.6
2,952,546	-		Xcc-8004.3021.1	0.88	-0.3
2,952,546	-		Xcc-8004.3021.1	0.88	-0.2
2,952,546	-		Xcc-8004.3021.1	0.88	-0.9
2,952,548	+		Xcc-8004.3021.1	0.88	-1.7
2,952,549	-		Xcc-8004.3021.1	0.89	+1.4
2,952,549	-		Xcc-8004.3021.1	0.89	+0.1
2,952,596	+				+0.6
2,952,596	+				-1.4
2,952,596	+				+0.6
2,952,597	-				-0.4
2,952,597	-				-0.3
2,952,620	-				-1.5
2,952,620	-				+0.1
2,952,646	+				-1.7
2,952,678	+				-0.4
2,952,742	+				+0.8
2,952,743	-				+1.3
2,952,769	+				-3.1
2,952,769	+				+0.6
2,952,769	+				-1.3
2,952,770	-				-0.1
2,952,923	+				+1.2
2,952,923	+				+0.1
2,952,923	+				+0.2
2,952,923	+				-0.8
2,952,923	+				-1.0
2,952,924	-				-0.1
2,952,924	-				-1.0
2,952,924	-				+0.8
2,952,924	-				+0.3
2,952,924	-				-0.3
2,952,927	+				-0.3
2,952,927	+				-1.1
2,952,927	+				-0.2
2,952,927	+				-1.3
2,952,928	-				+1.6
2,952,933	+				-0.1
2,952,934	-				+1.2
2,952,977	+				-0.3
2,953,010	+				+0.4
2,953,010	+				+0.3
2,953,013	+				-1.2
2,953,013	+				-0.1
2,953,013	+				+0.9
2,953,013	+				-1.3
2,953,013	+				+0.8
2,953,013	+				+0.3
2,953,014	-				-0.4
2,953,014	-				-0.6
2,953,014	-				-0.4
2,953,014	-				+0.8
2,953,014	-				+0.2
2,953,014	-				-0.0
2,953,075	+				-0.6
2,953,151	-				+1.1
2,953,151	-				-1.0
2,953,161	-				-0.1
2,953,167	+				-0.1
2,953,181	+				-1.0
2,953,264	-		Xcc-8004.3022.1	0.12	-0.3
2,953,307	+		Xcc-8004.3022.1	0.17	+2.7
2,953,314	+		Xcc-8004.3022.1	0.18	+0.5
2,953,314	+		Xcc-8004.3022.1	0.18	+0.6
2,953,314	+		Xcc-8004.3022.1	0.18	+1.8
2,953,315	-		Xcc-8004.3022.1	0.19	+0.1
2,953,315	-		Xcc-8004.3022.1	0.19	-0.4
2,953,338	+		Xcc-8004.3022.1	0.22	+1.2
2,953,338	+		Xcc-8004.3022.1	0.22	-0.6
2,953,339	-		Xcc-8004.3022.1	0.22	-1.1
2,953,345	-		Xcc-8004.3022.1	0.23	+1.0
2,953,360	-		Xcc-8004.3022.1	0.25	-0.9
2,953,543	-		Xcc-8004.3022.1	0.50	-2.2
2,953,560	+		Xcc-8004.3022.1	0.52	-2.1
2,953,560	+		Xcc-8004.3022.1	0.52	-1.0
2,953,560	+		Xcc-8004.3022.1	0.52	+1.3
2,953,560	+		Xcc-8004.3022.1	0.52	-0.6
2,953,561	-		Xcc-8004.3022.1	0.52	-0.3
2,953,561	-		Xcc-8004.3022.1	0.52	-0.8
2,953,561	-		Xcc-8004.3022.1	0.52	+1.1
2,953,615	-		Xcc-8004.3022.1	0.60	-0.4
2,953,615	-		Xcc-8004.3022.1	0.60	-1.7
2,953,615	-		Xcc-8004.3022.1	0.60	+0.1