Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2763.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
2,680,200	+		Xcc-8004.2761.1	0.48	-0.0
2,680,201	-		Xcc-8004.2761.1	0.49	-2.1
2,680,256	+		Xcc-8004.2761.1	0.65	-1.4
2,680,257	-		Xcc-8004.2761.1	0.66	-0.1
2,680,326	+		Xcc-8004.2761.1	0.87	+0.6
2,680,373	+				+0.0
2,680,374	-				-0.2
2,680,456	+				-0.4
2,680,457	-				+1.3
2,680,457	-				-1.0
2,680,539	+				-1.2
2,680,539	+				-1.4
2,680,539	+				-1.2
2,680,540	-				+0.3
2,680,540	-				-1.2
2,680,548	+				+0.6
2,680,549	-				-1.1
2,680,549	-				+0.3
2,680,549	-				+1.2
2,680,560	+				-1.3
2,680,561	-				-1.0
2,680,561	-				-0.2
2,680,595	+				-0.4
2,680,596	-				-0.8
2,680,620	+				-2.5
2,680,620	+				-0.1
2,680,621	-				-0.7
2,680,621	-				-1.8
2,680,621	-				-0.6
2,680,621	-				-0.4
2,680,624	+				+1.2
2,680,624	+				-1.5
2,680,624	+				+0.5
2,680,625	-				-1.0
2,680,625	-				-1.7
2,680,625	-				+0.7
2,680,625	-				+0.9
2,680,625	-				-1.2
2,680,625	-				-1.8
2,680,625	-				-0.7
2,680,625	-				-2.7
2,680,722	+				-0.8
2,680,810	+		Xcc-8004.2762.1	0.26	+1.8
2,680,810	+		Xcc-8004.2762.1	0.26	-0.2
2,680,811	-		Xcc-8004.2762.1	0.27	-1.0
2,680,811	-		Xcc-8004.2762.1	0.27	-1.3
2,680,811	-		Xcc-8004.2762.1	0.27	-0.5
2,680,811	-		Xcc-8004.2762.1	0.27	-1.0
2,680,830	+		Xcc-8004.2762.1	0.31	+0.5
2,680,830	+		Xcc-8004.2762.1	0.31	-0.2
2,680,830	+		Xcc-8004.2762.1	0.31	+1.3
2,680,922	-		Xcc-8004.2762.1	0.54	-0.9
2,680,922	-		Xcc-8004.2762.1	0.54	+0.7
2,680,922	-		Xcc-8004.2762.1	0.54	-1.6
2,680,922	-		Xcc-8004.2762.1	0.54	+1.7
2,680,989	+		Xcc-8004.2762.1	0.71	+0.4
2,680,989	+		Xcc-8004.2762.1	0.71	+0.3
2,681,045	+		Xcc-8004.2762.1	0.85	-0.4
2,681,045	+		Xcc-8004.2762.1	0.85	-0.3
2,681,046	-		Xcc-8004.2762.1	0.85	+0.7
2,681,054	+		Xcc-8004.2762.1	0.87	+1.4
2,681,072	-				-0.7
2,681,089	+				+1.1
2,681,285	+				+1.4
2,681,285	+				-0.7
2,681,286	-				+1.7
2,681,286	-				+0.6
2,681,286	-				-1.4
2,681,286	-				+1.1
2,681,296	-				-1.0
2,681,342	+				+2.1
2,681,342	+				-0.4
2,681,342	+				+1.0
2,681,342	+				+1.3
2,681,343	-				-0.5
2,681,343	-				-0.8
2,681,343	-				+1.8
2,681,343	-				+0.6
2,681,351	+				-2.0
2,681,351	+				-1.5
2,681,351	+				-0.1
2,681,352	-				-0.7
2,681,352	-				-0.7
2,681,395	+				-1.3
2,681,396	-				-0.3
2,681,419	+				+1.5
2,681,420	-				-0.0
2,681,431	+				-1.6
2,681,431	+				-2.4
2,681,431	+				-0.8
2,681,431	+				-1.0
2,681,431	+				-0.3
2,681,432	-				-1.2
2,681,432	-				+0.3
2,681,432	-				+0.2
2,681,432	-				-1.0
2,681,602	+				+1.3
2,681,603	-				+0.8
2,681,603	-				+0.8
2,681,608	+				+0.0
2,681,608	+				-1.0
2,681,609	-				-0.2
2,681,609	-				+0.2
2,681,609	-				+0.9
2,681,812	+		Xcc-8004.2765.1	0.10	-0.8
2,681,812	+		Xcc-8004.2765.1	0.10	-0.5
2,681,812	+		Xcc-8004.2765.1	0.10	-1.3
2,681,813	-		Xcc-8004.2765.1	0.10	-1.3
2,682,224	+		Xcc-8004.2765.1	0.24	-0.5
2,682,225	-		Xcc-8004.2765.1	0.24	+1.1
2,682,253	+		Xcc-8004.2765.1	0.25	-1.5
2,682,253	+		Xcc-8004.2765.1	0.25	-1.3